Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H20
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    62   3e-11
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    39   2e-04
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    29   0.13 
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    25   3.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   4.7  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    23   8.3  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    23   8.3  

>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 61.7 bits (143), Expect = 3e-11
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = +3

Query: 3   EPNDESGANVDAAKMWREDRAQFNRIAQTLVKKTLGL 113
           EPNDESGAN+DA KMWREDR ++ R+ + L +KTLGL
Sbjct: 130 EPNDESGANIDACKMWREDREEYCRVVRRLARKTLGL 166


>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   PNDESGANVDAAKMWREDRAQFNRIAQTLVKKTL 107
           PNDES AN+DAAK +RE+  +F +  + LV++++
Sbjct: 131 PNDESPANIDAAKEFRENPQEFKKRVRRLVRRSI 164


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   EPNDESGANVDAAKMWREDRAQFNRIAQTLVKK 101
           EPN+ S  N  AA++W +D  ++ R+     K+
Sbjct: 140 EPNNASPLNAQAAELWSKDPIEYKRLLMQRYKE 172


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 6   PNDESGANVDAAKMWREDRAQFNRIAQTLVKK 101
           PN +   + D AK+W+E+  Q    A+   KK
Sbjct: 114 PNPDDPLDNDVAKIWKENEPQAIANAREWTKK 145


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = +1

Query: 49  GGRTARSSIGS------RKPSSRKPSVWKHLNSSS 135
           G  T  SS GS      R+P  R PS+   LNSSS
Sbjct: 340 GEVTGSSSYGSIYYGRGRQPDQRPPSILTSLNSSS 374


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 70  SIGSRKPSSRKPSVWKHLNSSSRFNLSRF 156
           SI S+  +SRK S    +NSS   N+ RF
Sbjct: 237 SIKSQSRNSRKKSKLLSINSSCYSNIVRF 265


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 162 IILLIDELNAFILYLFYLCSFLKWRRLRII*RNTYNNGV 278
           ++LL D L  + +  FY  S + W    +I  +T+++ V
Sbjct: 72  LVLLFDALFTYFVAAFYRSSRMPWIIFIVILGHTFSSHV 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,138,240
Number of Sequences: 5004
Number of extensions: 18779
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)