Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_H20
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1289 - 36010924-36011001,36011441-36011518,36012321-360124... 43 6e-05
05_05_0110 + 22470869-22470920,22471044-22471146,22473261-224733... 42 1e-04
09_06_0240 + 21797458-21799369,21799636-21799784 31 0.19
09_02_0429 + 9306862-9306970,9307834-9307942,9308538-9308616,930... 31 0.19
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 31 0.19
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960 31 0.19
03_06_0260 - 32717142-32717270,32717743-32717831,32717950-327180... 31 0.19
01_01_1187 + 9444742-9445317 28 1.3
06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676 27 2.3
07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444... 25 9.4
05_06_0164 + 26085766-26085799,26086908-26087030,26087406-260875... 25 9.4
>01_06_1289 -
36010924-36011001,36011441-36011518,36012321-36012421,
36012506-36012603,36016213-36016315,36016435-36016486
Length = 169
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3
Query: 6 PNDESGANVDAAKMWREDRAQFNRIAQTLVKKT 104
PNDES AN++AAK WRE R F + + LV+K+
Sbjct: 133 PNDESPANIEAAKEWREKRDDFKKKVRRLVRKS 165
>05_05_0110 +
22470869-22470920,22471044-22471146,22473261-22473358,
22473430-22473530,22474052-22474129,22474578-22474655
Length = 169
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 6 PNDESGANVDAAKMWREDRAQFNRIAQTLVKKT 104
PNDES AN++AAK WRE R F + + +V+K+
Sbjct: 133 PNDESPANIEAAKDWREKRDDFKKKVRRIVRKS 165
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 122 RCFQTEGFLDEGLRDPIELRAVLPPHLGRVDVG 24
RCF+ G LD RD ++ AV P +L +DVG
Sbjct: 127 RCFEALGRLDLAYRDVAKVLAVEPNNLTAIDVG 159
>09_02_0429 +
9306862-9306970,9307834-9307942,9308538-9308616,
9308806-9308922,9309185-9309314,9311071-9311111
Length = 194
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 3 EPNDESGANVDAAKMWREDRAQFNRIAQT 89
+PNDE N DAA + R+D +F R QT
Sbjct: 139 QPNDEDPLNHDAAAVLRDDPQKFRRNVQT 167
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/34 (32%), Positives = 25/34 (73%)
Frame = +3
Query: 3 EPNDESGANVDAAKMWREDRAQFNRIAQTLVKKT 104
+PN S AN +AA+++ E++ ++NR + +V+++
Sbjct: 139 DPNPNSPANSEAARLFSENKREYNRKVREIVEQS 172
>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
Length = 127
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/34 (32%), Positives = 25/34 (73%)
Frame = +3
Query: 3 EPNDESGANVDAAKMWREDRAQFNRIAQTLVKKT 104
+PN S AN +AA+++ E++ ++NR + +V+++
Sbjct: 90 DPNPNSPANSEAARLFSENKREYNRKVREIVEQS 123
>03_06_0260 -
32717142-32717270,32717743-32717831,32717950-32718039,
32721571-32721596,32721772-32721896
Length = 152
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/34 (32%), Positives = 25/34 (73%)
Frame = +3
Query: 3 EPNDESGANVDAAKMWREDRAQFNRIAQTLVKKT 104
+PN S AN +AA+++ E++ ++NR + +V+++
Sbjct: 115 DPNPNSPANSEAARLFSENKREYNRKVREIVEQS 148
>01_01_1187 + 9444742-9445317
Length = 191
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 3 EPNDESGANVDAAKMWREDRAQFNRIAQTLVKKT 104
EPN++S N AA +W ++ +F ++ + L K T
Sbjct: 158 EPNNDSPLNTQAAALW-PNQDEFRKMVEKLYKPT 190
>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
Length = 964
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 152 RERLKRDELLRCFQTEGFLD 93
R RLKR+EL++ + EGF++
Sbjct: 483 RHRLKREELIKLWVAEGFIE 502
>07_01_0597 +
4438858-4439847,4439936-4440067,4440397-4441176,
4441359-4441646,4441710-4441808
Length = 762
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 106 RVFLTRVCAIRLNCARSSLHILAASTLAPLS 14
RVFL +V A+RL+ R+ L A +L P++
Sbjct: 387 RVFLCKVTAVRLDATRNEL--FATMSLIPVA 415
>05_06_0164 +
26085766-26085799,26086908-26087030,26087406-26087525,
26087632-26087696
Length = 113
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 46 CGGRTARSSIGSRKPSSRKPSVWKHLNSSSRFNLSRFTK*YY 171
C G T + S+K +KP WKH + + LS+ + ++
Sbjct: 3 CAGSTPKVDENSKK--LKKPKPWKHTQAITPTQLSKMREEFW 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,020,136
Number of Sequences: 37544
Number of extensions: 112260
Number of successful extensions: 287
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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