Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H18
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.29 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   2.1  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   2.1  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    25   3.6  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   4.8  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    25   4.8  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   4.8  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   6.3  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    24   8.3  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        24   8.3  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    24   8.3  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    24   8.3  

>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.29
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -2

Query: 232 RGSAVRKSVQCS---PPLWGYVQVYNSQMP 152
           +G ++ KS  CS   PPL G+V V+N Q P
Sbjct: 256 KGKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 208 PIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEIS 360
           P   PQ+ + +QN +  +   +  G P  K V+ +  T        DSDS++S
Sbjct: 777 PESPPQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLS 829


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 144 DNVDQVYDAWDVKVNGAIYVWQ 79
           D VD++YDAW    N     WQ
Sbjct: 54  DYVDEMYDAWKKDPNSVHASWQ 75


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 103 YFDVPSIINLVDIVNIQAFDYYTPERNPKEAD 198
           Y D P I+  V  +N+   D  T + NP + D
Sbjct: 68  YPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 175 ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTH 294
           +R+P  + Y   +  P N    +NA  A+NY+ +  A  H
Sbjct: 451 DRDPSTS-YLKTVIFPTNEQTHRNARIAMNYYSRAAARNH 489


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 13  ALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINL 132
           AL+R    A++ K       S LP+++  I+   PSI N+
Sbjct: 2   ALLRGNSLAISQKMLSVFQASALPHISLRIFISPPSIANI 41


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 163 YYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPT 291
           Y TP        Y  P Y P  R+P Q+   A +    NG PT
Sbjct: 590 YPTPTMPYIPVGYPVPGYTPYMRNPSQHTSVAPS---PNGTPT 629


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 62  CILGFTLSACFISRTRAVKP 3
           CI GF ++  + +RTR + P
Sbjct: 325 CIAGFVVNELYTTRTRIIAP 344


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 160 DYYTPERNPKEADYTAPIYAPQNRDPLQ 243
           +YY P++N  +  Y  P   PQ   P Q
Sbjct: 25  NYYPPQQNYPQQGYAPPQGYPQGGYPAQ 52


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 70  ISVLPNVNSSIYFDVPSII 126
           I+VLP+++ S + D PSI+
Sbjct: 191 INVLPSISPSSFLDSPSIM 209


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 106 FDVPSIINLVDIVNIQAFDYYTPERNPKEA-DY 201
           FDV  ++N+  +  +  +D Y  E  P  + DY
Sbjct: 189 FDVHDVLNVFQVTGLNEYDQYFMETCPATSKDY 221


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 62  CILGFTLSACFISRTRAVKP 3
           CI GF ++  + +RTR + P
Sbjct: 325 CIAGFVVNEFYTTRTRIITP 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,477,290
Number of Sequences: 5004
Number of extensions: 28415
Number of successful extensions: 97
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)