Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_H18
(362 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 42 2e-04
11_04_0234 + 15187065-15188241,15188316-15188494 38 0.002
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.12
12_02_0239 - 16125105-16126025,16126966-16127415 30 0.49
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 1.1
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 1.5
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 28 2.0
12_02_0292 + 16979550-16980662,16983249-16983731 27 3.4
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 3.4
05_03_0191 - 9521496-9521921 27 3.4
07_03_1383 + 26172329-26172448,26172770-26172961 27 4.5
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 27 4.5
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 27 4.5
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 27 6.0
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344... 26 7.9
01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471... 26 7.9
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 109 DVPS--IINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 279
D PS + +D VN+ AF P N + AP+Y +R +A + W+
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271
Query: 280 GAPTHKLVLGISTTGRTWKL 339
G P K+V+GI GR+W L
Sbjct: 272 GVPASKVVMGIPLYGRSWFL 291
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +1
Query: 91 NSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW 270
++++ + + + + +D VNI F + N AD AP+Y ++D +A + W
Sbjct: 214 DTNLNYPIDDMSSSLDWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISW 267
Query: 271 IQNGAPTHKLVLGISTTGRTWKL 339
+ G P KLV+GI GR+W L
Sbjct: 268 LDAGLPPCKLVMGIPLFGRSWFL 290
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.12
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 16 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 141
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 16 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 141
LVR+ K + + NMQL++ V+P Y V I DI
Sbjct: 340 LVRKAKHKIRTEENMQLMVDVMPLWYEKPYIKVQRIFETCDI 381
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 16 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 141
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 233 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 343
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 16 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 141
LVR+ K + ++ NMQL + +LP Y + I DI
Sbjct: 338 LVRKAKDEMMIEENMQLRVDLLPLWREKPYIKLQRIFETCDI 379
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 291 PQTCPWYQHHWTYVEARFR 347
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.5 bits (58), Expect = 3.4
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 55 NMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRD 234
++Q+++S P + F V + N + +V + A +T K+AD + Q R
Sbjct: 570 DLQILLSSGPY--EELNFGVEAAENALSVVKLIAILIFTVHNANKDADNQSYAEIVQRRV 627
Query: 235 PLQNADAA----INYWIQNGAPTHKLVLGI 312
LQNA AA + Y ++ A H + I
Sbjct: 628 LLQNAFAAAFEFVGYLLKRCAELHDVASSI 657
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 279 WCAYPQTCPWYQHHWTYVEARFR 347
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
>07_03_1383 + 26172329-26172448,26172770-26172961
Length = 103
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 183 PQRGGLHCTDLRTAEPRSSTKRRR 254
P RGG R A P SS +RRR
Sbjct: 10 PARGGTAAASARAAPPSSSRRRRR 33
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 184 PKEADYTAPIYAPQNRDPLQNADAAI-NYWIQNGAP 288
P+ D + PIY P PL+N A+ N Q AP
Sbjct: 167 PQRPDSSVPIYTPPQTQPLRNLPPALRNTERQQEAP 202
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Frame = +1
Query: 13 ALVREMKQALNV-KPN---MQLVISVLPNVNSSIYFDVPSI 123
AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 672 ALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 233 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 343
++Y +PT++ + GF +L LSL+ A ++ G+ +
Sbjct: 281 VMYYSPTIVQMAGFTSNKLALLLSLIVAGMNAAGTIV 317
>04_04_0200 -
23529497-23531938,23532586-23533720,23534272-23534463,
23535527-23535570
Length = 1270
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +1
Query: 115 PSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTH 294
PS + VD N + D +PE N D Y+ DP N +A + I N +
Sbjct: 767 PSRSDPVDCSNDMSSDSLSPENNETADDVLVEGYSVAIVDPCSNEKSAYHAHIPNDVANN 826
Query: 295 KL 300
++
Sbjct: 827 EV 828
>01_04_0103 +
16046012-16046018,16046214-16046366,16046908-16047158,
16047509-16047631,16047818-16047931,16048153-16048315,
16048867-16049462
Length = 468
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 73 SVLPNVNSSIYFDVPSIINL 132
SVLP + S+ Y+ VPSI+ L
Sbjct: 317 SVLPRLYSADYYTVPSIVEL 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,466,028
Number of Sequences: 37544
Number of extensions: 179635
Number of successful extensions: 555
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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