Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_H17
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 0.71
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 2.2
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar... 27 2.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 3.8
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 26 5.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 6.6
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 6.6
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 25 6.6
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 6.6
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 25 8.8
>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 158
Score = 28.7 bits (61), Expect = 0.71
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 145 YKQQVLRLLHMLWYFPSENGMLDHR 219
Y +VLR H WY P ++ M+D R
Sbjct: 42 YTSKVLRCSHCGWYEPVDSAMIDQR 66
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 523 INYRIYLQSNTDLYQRLLFIRYKPIYREDEKR 618
I + I L N D+ + L Y P Y E+EK+
Sbjct: 327 ITHYISLDDNLDVQESLGIFHYDPDYEENEKK 358
>SPAC23G3.07c |snf30||SWI/SNF complex subunit
Snf30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 8 YIKMEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVS 118
YI M+G++ L ++ D +++ G + N P P +S
Sbjct: 170 YITMQGANSLKAQQDLLNSFTGAPSNNSHNIPDPNLS 206
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 35 LNSRNDHIHNGEGTATENRRAPPPPYVSVEAQP 133
+ S+N H NG A N P+V+V A P
Sbjct: 1084 VTSKNGHSRNGSHAAHSNNVIGTQPHVNVSAVP 1116
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 444 ALTYPCLFLCTPTTSNIVNIKCNARNIINIEQNITKVKPKLRFSVLLF 301
A TYP T + + + I N+ N KVKP +S LL+
Sbjct: 131 ATTYPLDIARTRLSIETAGLTSRSLAINNVANNSLKVKPLTLWSTLLY 178
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 5 VYIKMEG--SHKLNSRNDHIHNGEGTATENRRAPPPP 109
V +K EG +++ + N +++NG + + APPPP
Sbjct: 91 VAVKHEGISNNESSDENMNVNNGNLDSFSSSSAPPPP 127
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.4 bits (53), Expect = 6.6
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 356 ILMIFLALHLIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLATITNLIRIKYLSIIG 535
+ ++ + + L F L +H++ +G +YV Y S GM +T I L I
Sbjct: 408 LFLLCIFVFLCFASSLGALIHRSVYGSALSYVKYTSNRAGMFFKGLLTFWILYSNLVPIS 467
Query: 536 FI--FNLIQTCISGYYLSVINLYTEK 607
F L++ + S +++Y E+
Sbjct: 468 LFVTFELVRYIQAQLISSDLDMYNEE 493
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 398 LLVVGVHKNKHGYVKAYVIYASILFGMSVLATITNLIRIKYLSIIGFIFNLIQTCI 565
L V+G + Y IYA++LF +S + I + + I ++II F + + I
Sbjct: 159 LAVIGSPSYSPTKYEQYGIYAALLFVISAMTAIPSRV-IAKVNIINITFQFLVSII 213
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 380 HLIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLA 490
HL+ + V V N+ G+V AYV+ SVLA
Sbjct: 988 HLVSEGVFVEKVEANRRGFVSAYVVPGRQTIINSVLA 1024
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 224 NNR*SSIPFSEGKYHSMCRSRNTCCL 147
+NR S IPFS+ ++H + CL
Sbjct: 119 DNRESEIPFSDTRFHDEFDRESRACL 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,795
Number of Sequences: 5004
Number of extensions: 51524
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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