Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_H16
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 71 2e-13
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 46 5e-06
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 38 0.002
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 31 0.19
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 2.4
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 4.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 5.5
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 25 7.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 7.3
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 25 7.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 9.6
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 9.6
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 70.5 bits (165), Expect = 2e-13
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 6/185 (3%)
Frame = +2
Query: 107 YFVLFMCLLWHGTNAIMWSLAPNTRKCLKEEL-HANVLVAGEYEVKEVA-GQRIDYIIRD 280
+F+L + + H N + + CL+E + N+++ + GQ + +I D
Sbjct: 10 FFMLALLTVVHALNFDIPAKTNPEPFCLREYVGEKNLVIVNLKTTGNMGDGQTLSMMITD 69
Query: 281 SKGHILSQ-KDSINKGKFSFVTETYDTFEVCFISKVPP---EHRGISQDVTLDIKIGIEA 448
S G+ S ++ + + +F + ++CF++ + P E + V L+ +G +A
Sbjct: 70 SSGNTHSSIQNVLGEKSVAFDVDASAMLDICFLNTLTPGAIESEHKKRSVKLEFTVGADA 129
Query: 449 KNYEGIGEAAKLKPMEMELKRLEDLSEAIVQDFTMMRKREEEMRDTNESTNNRVLFFSIF 628
+Y + +A L+P+E +++R D E I ++ RE R+TNESTN RV F+
Sbjct: 130 DDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNESTNERVKNFAYL 189
Query: 629 SMFCL 643
+ L
Sbjct: 190 TFISL 194
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 46.0 bits (104), Expect = 5e-06
Identities = 38/161 (23%), Positives = 72/161 (44%)
Frame = +2
Query: 161 SLAPNTRKCLKEELHANVLVAGEYEVKEVAGQRIDYIIRDSKGHILSQKDSINKGKFSFV 340
+L P+ R+C E L N ++ Y+ Q + I + G I+ Q+ + ++SF
Sbjct: 25 TLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFT 84
Query: 341 TETYDTFEVCFISKVPPEHRGISQDVTLDIKIGIEAKNYEGIGEAAKLKPMEMELKRLED 520
+ + CF + G S++V ++ G+ + E + P+ ++++L D
Sbjct: 85 VKNPGKYMYCFYNDALD---GESKEVLFNVH-GVIYISDEDLDAN---NPLLGKVRQLHD 137
Query: 521 LSEAIVQDFTMMRKREEEMRDTNESTNNRVLFFSIFSMFCL 643
+ + RE R+T ESTN+RV ++SI L
Sbjct: 138 TISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVIL 178
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/121 (22%), Positives = 51/121 (42%)
Frame = +2
Query: 281 SKGHILSQKDSINKGKFSFVTETYDTFEVCFISKVPPEHRGISQDVTLDIKIGIEAKNYE 460
+ H++ + D + F T T +C++S S L + + + K
Sbjct: 75 ANNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFS-STKTRLHVDLASDDKYNL 133
Query: 461 GIGEAAKLKPMEMELKRLEDLSEAIVQDFTMMRKREEEMRDTNESTNNRVLFFSIFSMFC 640
+ K + + L E+I+ + + R RE RDT+ES N+RV+ ++I +
Sbjct: 134 IASSEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIVV 193
Query: 641 L 643
L
Sbjct: 194 L 194
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 GQRIDYIIRDSKGHILSQKDSI-NKGKFSFVTETYDTFEVCFISKVPPEHRGI 406
GQ++ YI+ D+ G++ SI K K+S V E FI+ + H G+
Sbjct: 263 GQKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGL 315
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
3|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 551 MMRKREEEMRDTNESTNNRVLFFSIFSMFC 640
M R+++ ++D S N+R F S+F MFC
Sbjct: 925 MTRRKQLLLKDPVHSVNSRSFFISVF-MFC 953
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 164 LAPNTRKCLKEELHANVLVAGEYEVKEV 247
L P + +K EL +++ G Y++KE+
Sbjct: 620 LRPWVHEAVKRELGIRIMIRGRYDLKEI 647
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 341 TETYDTFEVCFISKVPPEHRGISQDVTLDIKIG 439
T+ + T E F SK+ P H IS ++L + G
Sbjct: 445 TKAFATLEKTFASKIKPSHNIISFSLSLVKRFG 477
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +2
Query: 74 VIISFCIMEVHYFVLFMCLLW 136
V+I+F + + +F+ F+C +W
Sbjct: 277 VVIAFVFLSLIFFISFICPIW 297
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 7.3
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +2
Query: 299 SQKDSINKGKFSFVTETYDTFEVCFISKVPPEHRGISQDVTLDIKIG---IEAKNY--EG 463
S+ ++ + K T + +VC +S + I Q TL K+ IE K E
Sbjct: 319 SENRTVEEMKIGDFGNTEEAKDVC-VSDEDIHNVNIKQITTLIGKMSQVQIECKRLRKEN 377
Query: 464 IGEAAKLKPMEMELKRLEDLSEAIVQDFTMMRKREEEMRDTNES 595
+ ++ + EL+ L L+ + +DF + K + ++D NE+
Sbjct: 378 LFLQSERTHLLRELEELRHLATSAKEDFVKVEKLNKIIKDENEN 421
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 170 PNTRKCLKEELHANVLVAG 226
PN+RK L EEL +VAG
Sbjct: 401 PNSRKRLSEELRRRFIVAG 419
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 422 LDIKIG--IEAKNYEGIGEAA-KLKPMEMELKRLEDLSEAIVQDFTMMRKREEEMRDTNE 592
L K+G + A+ Y+ + AA +++ E + +E + V +RK E + + +
Sbjct: 2419 LQEKVGATVFARAYQEVRNAAIEVRRERREKRAIEQVVAPEVASRKKIRKNERKRENRKQ 2478
Query: 593 STNNRVLFFSIF 628
TN+ + SIF
Sbjct: 2479 KTNHHRMVNSIF 2490
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 479 KLKPMEMELKRL-EDLSEAIVQDFTMMRKREEEMRDT-NEST 598
K K +++L E+LSE + FT+ + RE E T N+ST
Sbjct: 308 KKKSTNSVIRQLAENLSELAEKSFTIEQNRENEKSSTKNDST 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,048
Number of Sequences: 5004
Number of extensions: 50472
Number of successful extensions: 139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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