Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H15
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.0  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -1

Query: 496 IDCNFFFSTNYAVNLRTLNNYLDFFFMQTW 407
           +D N F +   ++N+  ++  +D F  Q+W
Sbjct: 13  VDFNIFVADINSINVEDMDFRVDMFVRQSW 42


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 520 SYFDCIFPIDCNFFFSTNYAVN 455
           S F C+F +D  F  STN  +N
Sbjct: 47  STFRCVFVLDPWFAGSTNIGIN 68


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 380 IIHLWLILKTFQVPEFVEQYGCLGHN-NYPIIYDLRLHHPKVCLRYNVIVLKVTIFNKLP 204
           II +WL+     VP+ + Q+G +  N N  +I D      K  L  +   +   +F  LP
Sbjct: 175 IIVIWLLALCLAVPQAI-QFGVVYENKNGSVILDTARCSMKWTLIEHAFEISTMLFFVLP 233

Query: 203 V 201
           +
Sbjct: 234 M 234


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 198 VLLILHHPYCLITLLYNYKVLYSNLKNWLKDRFYSFI 88
           VLL+L +    + +L  Y+++ S   NWL    Y  +
Sbjct: 15  VLLLLTNADNSVHILSKYQLITSTTLNWLPRTHYDHL 51


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 356 KTFQVPEFVEQYGCLGHNNYP-IIYDLRLHHPKVCLRYNVIVLKVTI 219
           K  +  + ++ Y C  ++ YP I+Y+  +      L    ++  VT+
Sbjct: 220 KVIKATKVLKMYACCPNDTYPMIVYEFSISRHYGILHATYVIPAVTM 266


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 318 TVLFNKFWYLERFQY*PEMNNLTLS 392
           T+  N++W  ER  +  E   LTLS
Sbjct: 85  TMYLNQYWKDERLAFSQEEEVLTLS 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,846
Number of Sequences: 438
Number of extensions: 3773
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)