Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H14
         (289 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0694 - 6136025-6136749,6137425-6137971                           27   2.4  
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454...    26   5.6  
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663...    25   7.4  
11_06_0350 + 22573760-22575262                                         25   9.8  

>08_01_0694 - 6136025-6136749,6137425-6137971
          Length = 423

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +1

Query: 7   FVVQYFIPILMIILCYKREV*S*HINNIMATTIKMILIASVITQIF 144
           +++  F+P+++I+LC+ +      IN  M+     +L+  V+  ++
Sbjct: 83  YMLACFLPLVLIVLCFPKSSAPARINTGMSLFTVALLVVPVMDAVY 128


>12_02_0869 -
           23844378-23844689,23844924-23845233,23845322-23845447,
           23845522-23845727,23845832-23845964,23846045-23846208,
           23846856-23846948,23847074-23847196,23847318-23847384,
           23847473-23847564,23847667-23847779,23847796-23847845,
           23848098-23848189
          Length = 626

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 63  SLIIAYKQYNGDDNKDDFNSVRNYTNILRSSRDN 164
           SL+  YK+ +  +  D F   R+Y +IL  S DN
Sbjct: 585 SLLFEYKKSSDGNVYDHFTISRDYRDILACSIDN 618


>10_07_0079 +
           12665141-12665167,12665613-12665702,12665783-12666310,
           12666341-12667741
          Length = 681

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 210 FVRKVGWSSQGARISYYL-LRSAKYLCNYGRY*NHLYCRRHYIVY 79
           F+ K G+S+Q A + YY  L     L     Y N  +C  H +V+
Sbjct: 95  FIGKDGYSAQSAGLDYYKELIKRNLLEPQNDYYNEEHCIMHDVVH 139


>11_06_0350 + 22573760-22575262
          Length = 500

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 201 KVGWSSQGARISYYLLRSAKYLCNYGRY*NHL--YCR 97
           K+GW+ +  R+   L++S+ Y  N   Y   +  YCR
Sbjct: 127 KIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCR 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,919,069
Number of Sequences: 37544
Number of extensions: 85519
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)