Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H14
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical ...    30   0.31 
Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    27   1.6  
U06933-1|AAA64938.1|  551|Caenorhabditis elegans CeSWAP protein.       27   1.6  
Z72518-1|CAA96699.2|  395|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical ...    25   6.6  
AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical...    25   6.6  
Z81084-3|CAB03108.1|  174|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical ...    25   8.7  
AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical ...    25   8.7  
AF440506-1|AAL34094.1|  174|Caenorhabditis elegans SKR-2 protein.      25   8.7  

>AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.4 protein.
          Length = 691

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 63  SLIIAYKQYNGDDNKDDFNSVRNYTNILRSSRDN---KKF*HLENSSQPFLR 209
           +L+ A   Y GD +K D ++V NY   + +S  N   +   +L N+  PF R
Sbjct: 110 NLLSAVNNYGGDHHKSDLSNVLNYCKRVFASCSNTRHQSVIYLTNNRNPFER 161


>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 258 FNLNLTISYAQNIF*FFVRKVGWSSQGARISYYLLRSAKY 139
           ++LN+T++ + NI   F+ K   SS    + YYL  +A +
Sbjct: 16  YSLNVTLALSINILLLFIMKTTKSSLLKDMQYYLFNTALF 55


>U06933-1|AAA64938.1|  551|Caenorhabditis elegans CeSWAP protein.
          Length = 551

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 151 PQEIIRNSSTLRTPANLSYEELEYILSVRNGQ 246
           P  ++RNS ++ TPANL   +     S+RN +
Sbjct: 510 PITMVRNSKSVSTPANLDILKTPISFSLRNDE 541


>Z72518-1|CAA96699.2|  395|Caenorhabditis elegans Hypothetical
           protein ZC374.1 protein.
          Length = 395

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 1   HVFVVQYFIPILMIILCY 54
           HV +  ++IP+L++I+CY
Sbjct: 190 HV-ITSFYIPLLIVIICY 206


>AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical
           protein Y44A6B.2 protein.
          Length = 324

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 72  IAYKQYNGDDNKDDFNSVRNYTNILRSSRDNKKF*HLENSSQPFLRRIRIYFERKKWSGS 251
           + YKQ +    K  F ++  Y  I+ +S D   F  L     P +   ++YFE ++++GS
Sbjct: 25  VIYKQVD----KSKFPTIYIYNTIIANSMDT--FLILITFIIPIVLDDKVYFEFRRFAGS 78

Query: 252 S*T 260
           S T
Sbjct: 79  SLT 81


>AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical
           protein B0511.2 protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 250 EPDHFLRSKYILILRKKGWLEFSRC 176
           +P  F + K+ L+ R K  +EF RC
Sbjct: 428 DPVQFRKKKFALLQRSKTSMEFLRC 452


>Z81084-3|CAB03108.1|  174|Caenorhabditis elegans Hypothetical
           protein F46A9.4 protein.
          Length = 174

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 112 ILIASVITQIFCAPQEIIRNSSTLRT 189
           I I+S   +IF  P+ +IR S+TL T
Sbjct: 16  IKISSSDDEIFLVPRNVIRLSNTLNT 41


>AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical
           protein C53C7.1b protein.
          Length = 362

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 4   VFVVQYFIPILMIILCY 54
           VF++Q+  P++ I  CY
Sbjct: 196 VFIIQFVFPLITITFCY 212


>AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical
           protein C53C7.1a protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 4   VFVVQYFIPILMIILCY 54
           VF++Q+  P++ I  CY
Sbjct: 196 VFIIQFVFPLITITFCY 212


>AF440506-1|AAL34094.1|  174|Caenorhabditis elegans SKR-2 protein.
          Length = 174

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 112 ILIASVITQIFCAPQEIIRNSSTLRT 189
           I I+S   +IF  P+ +IR S+TL T
Sbjct: 16  IKISSSDDEIFLVPRNVIRLSNTLNT 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,613,265
Number of Sequences: 27780
Number of extensions: 93444
Number of successful extensions: 240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)