Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H13
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s...    54   1e-08
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   3.2  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    26   3.2  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    26   3.2  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   4.3  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   5.7  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   5.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.5  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   7.5  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.9  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.9  
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    25   9.9  

>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
           subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 28/86 (32%), Positives = 46/86 (53%)
 Frame = +3

Query: 279 LNQGRYIDALRLVLNNAPLGSSNQQVKDNALALTLKVLLAIKSAQIEEAVGNLTLDDIDI 458
           +  G  +  L+ +L+  P G+  Q+V+   L   + VL  I++A I   V   + ++ID 
Sbjct: 47  IQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDN 106

Query: 459 LMKYIYRGFECPSEGSSGHLLLWHEK 536
           ++ +IYRG   P   +S  LL WHEK
Sbjct: 107 IVNFIYRGLANPQAYNSSVLLNWHEK 132


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -3

Query: 201 YIDLYLFYEMLNLMYF*PLSIRNIKNKIMILQ 106
           Y  +Y+F+ + NL+Y     ++ +++++ I+Q
Sbjct: 746 YSSMYVFFRLFNLLYERLYELQRLEDQVSIIQ 777


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 426 VGNLTLDDIDILMKYIYRGFECPSEGSSGHLLLWHEKATMLV 551
           +GN    DI     Y Y    CP + SS   L + E+  ++V
Sbjct: 351 IGNPKYKDIQAAYLYYYASDSCPKDLSSESQLAFVERCKLIV 392


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 345 NQQVKDNALALTLKVLLAIKSAQIEEAVGNLTLDDIDILMKY 470
           N QV  NAL     V  A +S +  EA+G+ T     I  KY
Sbjct: 91  NSQVLGNALGAKESVSQATESFEEPEAIGSFTFSGQKIENKY 132


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 255 DEGEVCVLLNQGRYID 302
           +E E CV L QGRY D
Sbjct: 308 EEAEACVRLMQGRYFD 323


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 329 TTWIFKSTSKRQCFSTYFKSVISN*ICT 412
           T W F     R+CF + FK  +   +C+
Sbjct: 300 TIWQFLDDGYRECFGSSFKESLQQALCS 327


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 147 MAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGEVC 272
           +A   S++ +RK  I Q   D F  D+     P  PD  + C
Sbjct: 18  VANAGSNAEWRKRIIYQILTDRFAVDDGSTDNPCDPDANQYC 59


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 192  DQYNEDNFKEDEADQAGPTGPDEGE 266
            D  N  N  EDEAD+ G     +G+
Sbjct: 4348 DSMNSTNIAEDEADEVGDKQLQDGQ 4372


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 375 LTLKVLLAIKSAQIEEAVGNLTLDDIDILMKYIYR 479
           +T+K L  I    I+  VGN+  ++++ L K I R
Sbjct: 162 ITIKTLRMIDLTGIQVCVGNMVPNEMEALQKCIER 196


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 414 IEEAVGNLTLDDIDILMKYIYRGFE 488
           + + +G L +DD++ L+ Y+Y   E
Sbjct: 756 VGQTLGELGVDDVNDLISYVYHDVE 780


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 150 AKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPT 248
           +K T S    ++   + NEDN  + +AD  GPT
Sbjct: 474 SKPTPSPPAEQLTDQKQNEDNEDKVKADSNGPT 506


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 153 KNTSSSAFRKIDIDQYNE 206
           + TS++ FRK DID+Y +
Sbjct: 170 EQTSTTVFRKEDIDRYEQ 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,242
Number of Sequences: 5004
Number of extensions: 35217
Number of successful extensions: 95
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)