Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H13
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0084 + 19899972-19900075,19900187-19900259,19900343-199004...    47   1e-05
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    29   1.9  
05_06_0082 - 25425050-25425479,25426551-25426783                       29   2.5  
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473...    28   5.8  

>11_06_0084 +
           19899972-19900075,19900187-19900259,19900343-19900443,
           19901502-19901637
          Length = 137

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/89 (29%), Positives = 45/89 (50%)
 Frame = +3

Query: 276 LLNQGRYIDALRLVLNNAPLGSSNQQVKDNALALTLKVLLAIKSAQIEEAVGNLTLDDID 455
           LL Q + ++AL+  L   PL + +++ K     +  + ++AI+   ++    +L  +  D
Sbjct: 32  LLKQSKPVEALKTALEGTPLKTRDERCKSANWIVVHRAMMAIRD--VDGMFNSLDPEYYD 89

Query: 456 ILMKYIYRGFECPSEGSSGHLLLWHEKAT 542
           ILMKY+YRG       +    L  HEK T
Sbjct: 90  ILMKYLYRGLSTGDRPTCDQCLKIHEKLT 118


>07_03_1567 -
           27772815-27773302,27773471-27773561,27773641-27773988,
           27774929-27775110,27775191-27775368,27775453-27775605,
           27775993-27776232,27776369-27776449,27776485-27776730,
           27777151-27777240,27777536-27777778,27778365-27778529,
           27779017-27779080,27779162-27779286,27779383-27779476,
           27779647-27779714,27779798-27779989,27780618-27780752,
           27780847-27780934,27781014-27781107,27781484-27781547,
           27781657-27781708,27781911-27782014,27782099-27782158,
           27782687-27782770,27782892-27783125,27783442-27783864,
           27784675-27784736,27784867-27785521
          Length = 1700

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 153 KNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDE 260
           K T  +A+   D D+YN++N  ED+ D A    PD+
Sbjct: 190 KPTKYNAYEDEDDDEYNDENDDEDD-DDADEDDPDD 224


>05_06_0082 - 25425050-25425479,25426551-25426783
          Length = 220

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 102 FTEVSLFYFLYF*SIMAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 266
           F E    YF+   ++ A N  + AF ++    Y   N K  EA + G  GP +GE
Sbjct: 148 FAEAESMYFMETSALDATNVDN-AFAEVLTQIYQIVNKKPVEAPEDGSAGPGKGE 201


>09_04_0435 - 17545879-17546605,17546721-17546782,17547123-17547335,
            17547506-17547590,17547904-17548061,17548174-17548294,
            17548765-17548927,17548973-17549097,17550800-17550888,
            17550970-17551636,17552671-17552717,17553506-17553862
          Length = 937

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 189  IDQYNEDNFKEDEADQAGPTGPDEGEVCVLL--NQGRYIDALRLVLNNAPLGSSNQQVKD 362
            +DQ  E         QAG  G DEG+V      NQG++ D+ R    ++ + SSN+++ +
Sbjct: 848  VDQAAEVEMLHQHQHQAGRGGWDEGDVMPFFYSNQGKHHDSSR----SSNISSSNRKLTE 903


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,449,331
Number of Sequences: 37544
Number of extensions: 183058
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)