Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H13
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067624-1|AAC17561.1|  152|Caenorhabditis elegans Arp2/3 comple...    97   7e-21
U88314-5|AAF99882.1|  146|Caenorhabditis elegans Hypothetical pr...    81   5e-16
U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical pr...    29   2.2  

>AF067624-1|AAC17561.1|  152|Caenorhabditis elegans Arp2/3 complex
           component protein 7 protein.
          Length = 152

 Score = 97.1 bits (231), Expect = 7e-21
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
 Frame = +3

Query: 147 MAKNTSSSAFRKIDIDQYNEDNFKE-DEADQAGPTGPDEGEVCVLLNQGRYIDALRLVLN 323
           M+KN  ++++RK+D+D ++ + + E DE       GPDE  V   L+  R  DAL   L 
Sbjct: 1   MSKNMQNTSYRKLDVDSFDPEQYDENDETVDTPGLGPDERAVQGFLSSNRLEDALHAALL 60

Query: 324 NAPLGSSNQQVKDNALALTLKVLLAIKSAQIEEAVGNLTLDDIDILMKYIYRGFECPSEG 503
           + PL + +Q VKD A  L  KVL + K+A+IE  V  L++++ DILMKY+Y+  E  ++ 
Sbjct: 61  SPPLKTKDQNVKDRATQLVTKVLQSFKNAEIEATVQKLSIEESDILMKYVYKSMEIGADA 120

Query: 504 S-SGHLLLWH 530
           +    LL WH
Sbjct: 121 AVCQSLLAWH 130


>U88314-5|AAF99882.1|  146|Caenorhabditis elegans Hypothetical
           protein C46H11.3 protein.
          Length = 146

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
 Frame = +3

Query: 174 FRKIDIDQYNEDNFKEDEADQAGPTGPDEGEVCVLLNQGRYIDALRLVLNNAPLGSSNQQ 353
           ++K ++D ++  +F ED  +++   GP+  EV   L   R   AL+ VL N P G S Q+
Sbjct: 6   YKKYNVDIFHPAHF-EDIQEESADCGPNVQEVRQFLESNRLEYALQSVLLNPPFGHSEQE 64

Query: 354 VKDNALALTLKVLLAIKSAQIEEAVGNLTLDDIDILMKYIYRGFE-CPSEGSSGHLLLWH 530
           +K+ A+ L  +V+ A +   IEE+V  L+ ++ DILMKYIY+  + C    +   LLLWH
Sbjct: 65  LKNRAVLLVAEVIHAFRQTDIEESVHKLSNENGDILMKYIYKAMQLCSDSATCLSLLLWH 124

Query: 531 EK 536
            +
Sbjct: 125 SQ 126


>U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical
           protein D1005.3 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 81  SFCAKYLFTEVSLFYFLYF*SIMAKNTSSSAFRKIDIDQYNEDNFKEDEADQA 239
           SF   +  + +SLF FL+   I +    S  FRK+    Y++ N+   + DQA
Sbjct: 4   SFHFSHFSSLLSLFLFLFL--IASHREHSKPFRKLIKKMYSKLNYSHQKGDQA 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,813
Number of Sequences: 27780
Number of extensions: 192474
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)