Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H12
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   149   8e-37
Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    27   5.5  
Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z93374-6|CAB07559.1|  108|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   9.7  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  149 bits (362), Expect = 8e-37
 Identities = 81/158 (51%), Positives = 98/158 (62%)
 Frame = +3

Query: 12  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 191
           M +PK +   IYEYLF EGV VAKKD++A  HP++E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 192 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 371
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119

Query: 372 AYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGRSAP 485
           AYR         +K  + GPG A V +R GFGRG   P
Sbjct: 120 AYRT--------EKVTEAGPGGAPV-YRAGFGRGAPPP 148


>Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical
           protein F58D12.1 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 481 ADRPLPKPPLNSTSAEPGPTSA 416
           +DRP P+PP +S S+ P P SA
Sbjct: 45  SDRP-PRPPSSSASSSPAPGSA 65


>Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical
           protein C03D6.5 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +3

Query: 102 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 281
           +HPD+ KIP   ++     L    Y  ++F   +  W++ NE  +   +  + P + +  
Sbjct: 78  EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134

Query: 282 TLKRSVRTETVR 317
            L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +3

Query: 321 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 467
           G VG P AP +  +   A   A P G P    A   PG A     G  G
Sbjct: 259 GNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGAPGHPGQAGSSLPGAPG 307


>Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical
           protein T13F3.3 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 271 ISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTYPLDLSDC 152
           +S G C    R S+ S +KYQ K     C + Y LD   C
Sbjct: 28  LSCGACASFFRRSVVSKIKYQCKDGKKRCQIRY-LDRHFC 66


>Z93374-6|CAB07559.1|  108|Caenorhabditis elegans Hypothetical
           protein C06C6.8 protein.
          Length = 108

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 300 RTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADV 425
           R + V R A  RPD    T+       + PPA  P ++  +V
Sbjct: 39  RVDLVPRNAPVRPDPVKETSAQTCPTAQTPPAKTPMERSGNV 80


>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
           protein F02E9.4b protein.
          Length = 1507

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 450 IQHQLNQGRHQPSYHEELQLVVRADKLIYLQLFVLEHQACQ 328
           IQ   +Q +HQ    ++L+L +R  + I ++   ++HQ  Q
Sbjct: 34  IQQSQHQQQHQNQQQQQLELQIRDQERILIEQQRMQHQQQQ 74


>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
           protein F02E9.4a protein.
          Length = 1505

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 450 IQHQLNQGRHQPSYHEELQLVVRADKLIYLQLFVLEHQACQ 328
           IQ   +Q +HQ    ++L+L +R  + I ++   ++HQ  Q
Sbjct: 34  IQQSQHQQQHQNQQQQQLELQIRDQERILIEQQRMQHQQQQ 74


>Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical
           protein W04D2.1b protein.
          Length = 894

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 328 LAGLMLQHEQLKIDQLIGAHHQLE 399
           LA L++ HE  +I++L+ AH Q +
Sbjct: 537 LADLVIVHEMREIEELVNAHDQFK 560


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical
           protein W04D2.1a protein.
          Length = 920

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 328 LAGLMLQHEQLKIDQLIGAHHQLE 399
           LA L++ HE  +I++L+ AH Q +
Sbjct: 563 LADLVIVHEMREIEELVNAHDQFK 586


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 321 GAVGRPDAPARTAEDRSAYRRAPP 392
           G+V R   PAR A D   Y+ APP
Sbjct: 76  GSVFRARRPARGAYDEGDYKEAPP 99


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
           protein ZK512.3 protein.
          Length = 1418

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 184 SLTYPLDLSDCIALITWRLGIFSRSG 107
           S  YPL L+DC  LIT +L + S SG
Sbjct: 293 SQLYPLGLADCYTLIT-KLLVSSNSG 317


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 276 PATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSAD 443
           PA +  +    +  + A G  D P+  A + +A        AP D  A +GP +++
Sbjct: 451 PADVATTAPETSSAQSAAGSYDVPSEPASEVTAPIVESATEAPSDSAAPIGPAASE 506


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 126 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 296
           P +QV+  +  +    ++ E      F W+ T+  I  + +F+  PP  +I+   LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,359
Number of Sequences: 27780
Number of extensions: 216838
Number of successful extensions: 851
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)