Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H10
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    31   0.048
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    26   1.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   3.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   7.3  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    24   7.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   9.6  
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr...    23   9.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   9.6  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 31.1 bits (67), Expect = 0.048
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 231 EEFKQFYTKWLLKRSPVRVGATISEISP 314
           EE+K  +T W + +SP+ +G  +S +SP
Sbjct: 279 EEYKTHFTMWAILKSPLILGNDVSSMSP 306


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 126 FKRLEVLHYLFVTRPTVGTITWLAA*RVKISLGAQEEFKQFYTKWLLKRSPV 281
           F +L   ++L+    ++ T+ WLAA    I +  ++    F  K  L + PV
Sbjct: 205 FLKLSYTYWLYTKDQSIFTVKWLAAVERIIQVLEEQSSPSFDEKTGLPKDPV 256


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 235 SSNNSIQNGCSKDHLSESERRFRKSVQRF 321
           S NN++ N  SKD  S S    R+ ++ F
Sbjct: 237 SMNNNVNNNKSKDIWSSSNTEEREQIREF 265


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 232 KSSNNSIQNGCSKDHLSESERRFRKSVQRFKHQ 330
           + +NNS Q   +KD+  ++ +R +K   + K Q
Sbjct: 35  EQNNNSSQASVTKDNKKKAAKRAKKKAAKKKKQ 67


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 213 ISLGAQEEFKQFYTKWLLKRSPVRVGATISEISPTIQ 323
           + LG     K  + KW+ K S +++      I+P  Q
Sbjct: 379 VLLGENGTGKTTFCKWMAKNSDLKISMKPQTIAPKFQ 415


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 72  SFKELFYFYFGQDV*ILIFKRLEVLHYLF 158
           SF   F F+  Q + I+ F    +LH+LF
Sbjct: 130 SFSFSFLFFLSQ-IFIVYFSSFPILHFLF 157


>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 66  FLVSQTKIFFLMTLLIKDWA 7
           F  S+T +FFL   L+  WA
Sbjct: 121 FKESKTPVFFLPAFLLPSWA 140


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 182 NYLAGCLKS*DFIRSSRRVQTILYKMVAQKITCPSRSDDFGNQSNDSNTKRY 337
           +YL  CL         R V+T L+K+V+        S D    ++ +  KR+
Sbjct: 384 SYLISCLHIPSTTPRERNVETSLHKVVSSLDLSEEISPDRATPTSFTERKRF 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,408
Number of Sequences: 5004
Number of extensions: 22094
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)