Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H09
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    30   0.27 
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    27   3.3  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.8  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   7.7  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.7  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    25   7.7  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 11  VIMTSGRIIIYGGRGALGSACVNHFKSSNWWVANIDLNPNESADFNVAVPKD-ASWVQQE 187
           +I     + + G +  +     N   +  W V N++L+P  S+ F    P D A  V QE
Sbjct: 62  IIRAGENVFVCGIKAEIAEPFENS-PNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQE 120

Query: 188 QHVVNELSNALQGQKV 235
            H   + SN +  Q +
Sbjct: 121 LHQTLQQSNLINLQSL 136


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 464 ELLPLPYHNQSYQEFLLKPL*HQSRQVIHP 375
           E+L +P+     +EF+L+PL   S  ++HP
Sbjct: 356 EVLTIPHLGLQEREFVLRPLLALSPDLVHP 385


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = -3

Query: 631 IKQLSHEGQWGP*TEISLRHPFSVHFCIQCHRHYSHNQ*ILRETRVFTSKRFSKLVNCSL 452
           +  +S  G+ G  +   L  P  VH  +   RH++++  +    + +TS      V+ ++
Sbjct: 134 LNDISEPGETGEASPFVLHGPSEVHQFLSSMRHFTYHTNVNLTVQGYTSAEAPVFVDENI 193

Query: 451 CHT 443
           C T
Sbjct: 194 CVT 196


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 578  KADFSSWTPLTFVAQLFDKWIKGDER 655
            K D   W  LTF+ QL +   KGD +
Sbjct: 3055 KGDIPVWHWLTFIPQLLNSLSKGDTK 3080


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +2

Query: 182 QEQHVVNELS---NALQGQKVNAVI-CVAGGWAGGNAAKDLSKQADLMWRQSVWSSTIAA 349
           +E HV        N +Q   +N  I CV  G       KD S++ D    + +W+ T++A
Sbjct: 334 EETHVTGNYDLTVNTVQANPINMQIKCVCYGNRIYKYEKDESEEEDESKEKDLWTGTVSA 393


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 102 HQLEDLK*LTQADPSAPLPPYIMILPLVIITSI 4
           H+L+ ++ +  AD    L PY++ L + ++  I
Sbjct: 166 HRLDIIEYILNADKETDLKPYVLELAMTVVLDI 198


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 113 IDLNPNESADFNVAVP-KDASWVQQEQHVVNEL 208
           + L PN    FN+ +P + A+ +QQ   V+  L
Sbjct: 76  VSLTPNPVISFNIKIPSRTANAIQQSNRVIVHL 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,733
Number of Sequences: 5004
Number of extensions: 58048
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)