Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H09
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...   249   2e-66
AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like p...    29   3.1  
AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolo...    29   3.1  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score =  249 bits (609), Expect = 2e-66
 Identities = 118/224 (52%), Positives = 155/224 (69%), Gaps = 2/224 (0%)
 Frame = +2

Query: 17  MTSGRIIIYGGRGALGSACVNHFKSSNWWVANIDLNPNESADFNVAVPKDASWVQQEQHV 196
           M+SG++I+YGG+GALGSA +  FK + + V NIDL+ N+ AD N+ V  + +W +QEQ +
Sbjct: 1   MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSI 60

Query: 197 VNELSNALQGQKVNAVICVAGGWAGGNAA-KDLSKQADLMWRQSVWSSTIAATLAAKYXX 373
           + + +++LQG +V+ V CVAGGWAGG+A+ KD  K ADLM +QSVWSS IAA LA  +  
Sbjct: 61  LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK 120

Query: 374 XXXXXXXXXXXXXXXXTPGMIGYGMAKGAVHQLTKSLGGKDSGLPENSLVVAIMPVTLDT 553
                           TP MIGYGMAK AVH LT SL  KDSGLP+NS V+ IMPVTLDT
Sbjct: 121 PGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDT 180

Query: 554 EMNRKWMPKADFSSWTPLTFVAQLFDKW-IKGDERXTSGSLVAL 682
            MNRKWMP AD SSWTPL+F+++   KW  +   R +SG+L+ +
Sbjct: 181 PMNRKWMPNADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKI 224


>AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like
           protein ICP-1 protein.
          Length = 622

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 558 ISVSSVTGIIATTSEFSGRPESLPPRDLVSW*TAP--FAXXXXXXPGVPSKAALAP 397
           IS     G I+  + +SG P   PPR+  +  T    F+       G P +AA+ P
Sbjct: 151 ISKKKTEGSISRNAAYSGTPRRNPPREAHNQATPRNIFSSTPGRMAGTPGRAAVVP 206


>AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical
           protein C27A12.2 protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 577 RHPFSVHFCIQCHRHYSHNQ*ILRETRVFTSKRFSKLVNCSL----CHTITNH 431
           R P  ++ C+QC++H  +   I    R  T ++ +    C++     HT+  H
Sbjct: 65  RPPAQIYHCVQCNKHIKYPSKITEHIRKHTGEKPNVCSICNISFSQAHTLKTH 117


>AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolog
           protein 1 protein.
          Length = 622

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 558 ISVSSVTGIIATTSEFSGRPESLPPRDLVSW*TAP--FAXXXXXXPGVPSKAALAP 397
           IS     G I+  + +SG P   PPR+  +  T    F+       G P +AA+ P
Sbjct: 151 ISKKKTEGSISRNAAYSGTPRRNPPREAHNQATPRNIFSSTPGRMAGTPGRAAVVP 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,062,616
Number of Sequences: 27780
Number of extensions: 336985
Number of successful extensions: 929
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)