Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H08
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   215   5e-57
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    29   0.67 
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    29   0.67 
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    29   0.67 
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    29   0.67 
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    29   0.67 
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    29   0.67 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.5  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   3.6  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  215 bits (525), Expect = 5e-57
 Identities = 104/210 (49%), Positives = 132/210 (62%)
 Frame = +2

Query: 5   VQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 184
           + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++    K
Sbjct: 105 IAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAK 164

Query: 185 VGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALS 364
           VG SEATLLNMLNISPF+YG+ V  +YD G +F+P ILD+  EDL    L+  + + A+S
Sbjct: 165 VGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAIS 224

Query: 365 LSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXX 544
           L   YPT+ S  HS+ N +KNL+A++  TE  F+     K ++ DPS FV          
Sbjct: 225 LGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAFV--VAAAPAAA 282

Query: 545 XXXXXXXXXXXXXXXXXSESDDDMGFGLFD 634
                             ESD+DMGFGLFD
Sbjct: 283 AGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 599 ESDDDMGFGLFD 634
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 599 ESDDDMGFGLFD 634
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 599 ESDDDMGFGLFD 634
           ESD+DMGFGLFD
Sbjct: 98  ESDEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 599 ESDDDMGFGLFD 634
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 599 ESDDDMGFGLFD 634
           ESD+DMGFGLFD
Sbjct: 98  ESDEDMGFGLFD 109


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 599 ESDDDMGFGLFD 634
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 150 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 25
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 261 TCLTTRPYEKGEMFNMLRRVASEAP 187
           + LT  PYEKGE  N +R   S  P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,540
Number of Sequences: 5004
Number of extensions: 46800
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)