Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_H08
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 263 8e-71
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 31 1.1
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 31 1.1
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 31 1.1
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 31 1.1
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 30 1.9
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 29 4.4
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 29 4.4
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 5.8
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.8
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.8
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 263 bits (645), Expect = 8e-71
Identities = 123/208 (59%), Positives = 154/208 (74%)
Frame = +2
Query: 11 APARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVG 190
APA+ GAIAP V +P NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVG
Sbjct: 109 APAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVG 168
Query: 191 ASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLS 370
ASE+ LLNML ++PFSYGLVV+QVYD GT++ P +LD+ E+LR++FL+GV NVA++SL+
Sbjct: 169 ASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLA 228
Query: 371 IGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXX 550
+ YPT+AS HS+ANG +N+L +AAVT+V FKEA TIK +I DPSKF
Sbjct: 229 VNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF----AAAAPAAAA 284
Query: 551 XXXXXXXXXXXXXXXSESDDDMGFGLFD 634
ESDDDMGFGLFD
Sbjct: 285 APAAAAPAAKKEEPKEESDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 599 ESDDDMGFGLFD 634
ESDDDMGFGLFD
Sbjct: 96 ESDDDMGFGLFD 107
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 599 ESDDDMGFGLFD 634
ESDDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 599 ESDDDMGFGLFD 634
ESDDDMGFGLFD
Sbjct: 99 ESDDDMGFGLFD 110
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 599 ESDDDMGFGLFD 634
ESDDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -1
Query: 232 GRDVQHVEKSSFRSSHLITRLQDM-DIIDNFNSTL*NLSGDGKSLEERSLLRTKA 71
G + + E F + ++TRL ++ DII N+TL ++G + L +R R +A
Sbjct: 425 GNQIVNYETFFFPAHSIMTRLSNVKDIIKELNTTLNFMTGSNEQLRDRFHNRNRA 479
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 283 EDGTGVVHLFDNKTIRKGRDVQ-HVEKSSFRSSHLITRLQDM 161
ED GVV +F+N+ GR V+ + + + SHL R++++
Sbjct: 791 EDQKGVVQIFNNQCTSSGRKVKLNQNVADYCGSHLEARVEEI 832
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 283 EDGTGVVHLFDNKTIRKGRDVQ-HVEKSSFRSSHLITRLQDM 161
ED GVV +F+N+ GR V+ + + + SHL R++++
Sbjct: 804 EDQKGVVQIFNNQCTSSGRKVKLNQNVADYCGSHLEARVEEI 845
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 188 GASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 367
G S+ +L L+ +G V ++ D G++ A + + + R LAG A SL
Sbjct: 570 GRSDESLNRFLSRGMIVWGPEVTKILDEGSLLAATVKNPENSGFRTVVLAGAAKTGKTSL 629
Query: 368 S 370
+
Sbjct: 630 A 630
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 188 GASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 367
G S+ +L L+ +G V ++ D G++ A + + + R LAG A SL
Sbjct: 570 GRSDESLNRFLSRGMIVWGPEVTKILDEGSLLAATVKNPENSGFRTVVLAGAAKTGKTSL 629
Query: 368 S 370
+
Sbjct: 630 A 630
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 188 GASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 367
G S+ +L L+ +G V ++ D G++ A + + + R LAG A SL
Sbjct: 504 GRSDESLNRFLSRGMIVWGPEVTKILDEGSLLAATVKNPENSGFRTVVLAGAAKTGKTSL 563
Query: 368 S 370
+
Sbjct: 564 A 564
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 677 VLMRPHVYYDAHVLSQRDQSPCRRHS 600
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 677 VLMRPHVYYDAHVLSQRDQSPCRRHS 600
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 677 VLMRPHVYYDAHVLSQRDQSPCRRHS 600
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 677 VLMRPHVYYDAHVLSQRDQSPCRRHS 600
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,521
Number of Sequences: 27780
Number of extensions: 279957
Number of successful extensions: 859
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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