Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H08
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.18 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.54 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.54 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 361 LVVHRVPDGRVCASFHRERFQEPARHRC 444
           L +H +P+ +V   F  +R +E A  RC
Sbjct: 396 LTIHTIPEVKVTPRFQAKRLKEEANIRC 423


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 176 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 289
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 176 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 289
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 100  EERSLLRTKASVMSGNDDRQW 38
            E R  LRT A++++ N+ R W
Sbjct: 1177 ELRPYLRTAAAILTWNEKRFW 1197


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 94  FLPGSFHPH 120
           FLP S+HPH
Sbjct: 311 FLPPSYHPH 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,785
Number of Sequences: 438
Number of extensions: 3465
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)