Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_H05
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0178 + 6195402-6199158,6199438-6200003 29 1.4
04_03_0118 - 11474060-11475298 28 1.8
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 28 2.4
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269 27 3.2
06_03_1220 - 28505306-28508497 27 4.2
05_05_0287 + 23868503-23869045 27 5.6
02_01_0729 - 5465521-5466005,5466481-5466793,5466878-5467094,546... 27 5.6
01_06_1527 - 38006174-38006815,38006920-38007420 27 5.6
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905... 26 7.4
08_02_0350 + 16123139-16124041 26 7.4
08_01_0076 - 540886-541527,542173-542754 26 7.4
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535... 26 9.8
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 26 9.8
06_03_1219 - 28491185-28494415 26 9.8
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531... 26 9.8
01_06_0495 - 29779499-29781325 26 9.8
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 26 9.8
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 321 VCLILWHASCGSRRYLVHHS*GVARRYHRG-LRSKCRRSCHPDELPG 184
VCL H CG R L+ +R Y L+ C HP E+ G
Sbjct: 1137 VCLHWCHTDCGLRHSLIRKGGSGSRAYSTNELQFHCAACGHPSEMFG 1183
>04_03_0118 - 11474060-11475298
Length = 412
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 249 RRYHRGLRSKCRRSCHPDE 193
R+YH R C SC+PDE
Sbjct: 304 RKYHAIFRKHCTPSCYPDE 322
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 244 VSSGLTVQVPTILSP*RASRRMPAILSSGVLPL 146
VSS + +P + SP +ASRR+ A+ S LPL
Sbjct: 19 VSSQPPLHLPRLRSPHQASRRLSALPFSRALPL 51
>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
Length = 309
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 287 HGVIWFTTVEGLREGIIGAYGPSADDL-VTLTSFQE--DAGHFVFG 159
H +W +E + E +G G ADD+ L S E D+G+ FG
Sbjct: 142 HAALWVKEIEKMEEARLGGGGGGADDIDRLLDSCSEIFDSGNTDFG 187
>06_03_1220 - 28505306-28508497
Length = 1063
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 192 ARQGDKIVGTWTVSPDDTFSQPLNCG 269
+R GD IVG W SPD + CG
Sbjct: 43 SRAGDGIVGEWQRSPDCCTWDGVGCG 68
>05_05_0287 + 23868503-23869045
Length = 180
Score = 26.6 bits (56), Expect = 5.6
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 161 GCFAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVPWDHVEARARRC 18
G +D G+ S Y A + G V WD V RARRC
Sbjct: 32 GGLVSDLDAAGVASSYYAPFAAAGAGAAIAAVAGVVAWDAVGHRARRC 79
>02_01_0729 -
5465521-5466005,5466481-5466793,5466878-5467094,
5467797-5468116
Length = 444
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 48 PGHAADVQTVPAPY-TITTAVSSVKAGHSIDVVISGK 155
P AADV VP P ++ T+V++V AGH + +S +
Sbjct: 50 PAPAADVY-VPTPVPSLPTSVAAVAAGHYHSLAVSAE 85
>01_06_1527 - 38006174-38006815,38006920-38007420
Length = 380
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 246 RYHRGLRSKCRRSCHPDE 193
RY+ R CR SC+PDE
Sbjct: 273 RYYPLFRRHCRPSCYPDE 290
>09_02_0420 +
9051728-9051754,9053244-9053530,9055263-9055500,
9057010-9057204,9058075-9058339,9058520-9058827
Length = 439
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 146 QRQNTRRQNGRHPPGSS-SG*QDRRHLDR 229
+R+ T GR PPGSS SG + R+H R
Sbjct: 316 RRRATGHPKGRQPPGSSGSGARARQHRRR 344
>08_02_0350 + 16123139-16124041
Length = 300
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 12 TGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPED 167
+G P FD + AA+V+ VP P + ++SS+ ++ V+ P+D
Sbjct: 107 SGEPAGFFFDELDALAAEVEVVPLPSRM--SLSSIGGLAAVAGVVLPSLPDD 156
>08_01_0076 - 540886-541527,542173-542754
Length = 407
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 246 RYHRGLRSKCRRSCHPDE 193
+Y+ R CR SC+PDE
Sbjct: 300 KYYSIFRKHCRPSCYPDE 317
>08_02_0266 +
15051868-15052286,15052376-15052475,15053540-15053581,
15053734-15053930,15055412-15055508,15055604-15055699,
15056395-15056633,15056728-15056811,15056898-15057185,
15057658-15057718,15061093-15061362,15061663-15061722
Length = 650
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 234 GLRSKCRRSCHPDELPGGCRPFC 166
G + +C+RS HP +L G + FC
Sbjct: 253 GCKGECKRSFHP-KLEDGTKSFC 274
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 252 QPLNCGEPNNAVTHKMH-AKELDRQTVSYPWTAPK 353
+PL G+PN++ H H + +D+ + P+ K
Sbjct: 80 RPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDK 114
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 201 GDKIVGTWTVSPDDTFSQPLNCGE 272
GD IVG W SPD + CG+
Sbjct: 47 GDGIVGEWQRSPDCCTWDGVGCGD 70
>05_04_0375 +
20750170-20751011,20751707-20751865,20752894-20753146,
20753287-20753316
Length = 427
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 135 DVVISGKTPEDKMAGILLEARQGDKIVGTWTVSP 236
DVV + K P + L+ A + D VGTW+ P
Sbjct: 365 DVVANMKAPVTLLNVTLMGAFRSDAHVGTWSYPP 398
>01_06_0495 - 29779499-29781325
Length = 608
Score = 25.8 bits (54), Expect = 9.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 18 APPSACFDMIPGHAAD-VQTVPAPYTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEA 194
APPS + +P H A ++T P ++ A +S A H D V P + G L+ A
Sbjct: 3 APPSLPYRHLPQHLAGLLKTRPLHDLLSDASTSRAARHLFDAV---PRPTPALCGTLISA 59
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 25.8 bits (54), Expect = 9.8
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 21 PPSACFDMIPGH--AADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEA 194
PPS +P H Q+ P+P + V+ ++AGHS S + ED + L A
Sbjct: 306 PPSLYPQRVPPHLIVQQQQSSPSPTGRGSPVARLRAGHSPATPSSDVSMEDSPSSSELLA 365
Query: 195 RQGDK 209
+ +K
Sbjct: 366 GREEK 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,115,477
Number of Sequences: 37544
Number of extensions: 268938
Number of successful extensions: 804
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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