Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H04
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    31   0.065
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    27   0.80 
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   3.2  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   3.2  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   4.3  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   5.6  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    25   5.6  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    25   5.6  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    24   7.4  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   9.8  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    24   9.8  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    24   9.8  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    24   9.8  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    24   9.8  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    24   9.8  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   9.8  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     24   9.8  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 31.1 bits (67), Expect = 0.065
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 213 VVDYAKKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYI 347
           ++DYA K     +   V  +  DDDL++IS  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 183 LQQIGTVVGGVVDYAKKKSYDDML--RQVQDSTTDDDLLRISEEMFNADINNAFNYIQ 350
           L+++G+   GVV  A++    D++  +Q+   T  DD+  I +E+F     N+ N IQ
Sbjct: 12  LRKLGSGSFGVVWKARENVSGDIIAIKQIDLETGIDDITDIEQEVFMLSNCNSSNVIQ 69


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +3

Query: 33  MRIILILLVSLGLCHADDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVV 206
           M + LI+ VS GL   + ++  +   FN +LP +I NS  G + + + N  + IGT++
Sbjct: 73  MVVGLIIRVSPGLIIQNMVSFHSTYFFNVLLPPIILNS--GYELHQS-NFFRNIGTIL 127


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 228 KKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNA 335
           KK+S +D L Q+     DD++LR+ E+M  A + +A
Sbjct: 173 KKRSNEDNLEQM----ADDEVLRLREQMRLAALRDA 204


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 26  SQNENNFNITGFSRAMSCR*HSSSGWSNI*QY 121
           SQN +++N   F R+   R  S S  SNI +Y
Sbjct: 198 SQNNSHYNDKSFHRSRYSRARSRSPGSNISEY 229


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 264 QDSTTDDDLLRISEEMFNADI 326
           QD   DDD+  + EE+F+ D+
Sbjct: 34  QDDEPDDDIDALIEELFSEDV 54


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 21  FNPKMRIILILLVSLGLCHADDIAQAAGQIFNSILPNLISNSVTG-QQGNTAQNTLQQIG 197
           F P++  + I +V+ G+CH D     +G+    + P ++ +   G  +    Q T  Q+G
Sbjct: 33  FPPRVHEVRIKIVNSGVCHTDAYT-LSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVG 91

Query: 198 TVV 206
             V
Sbjct: 92  DPV 94


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 138 SNSVTGQQGNTAQNTLQQIGTVVGGVVDYAKKKSYDDMLRQVQDSTTD 281
           ++SVT ++     NTLQQ   V G +   A+     +++ +V++S  D
Sbjct: 217 ADSVTKEEHQGGSNTLQQTKDVGGAIAPAAEVGK--EVINEVENSKDD 262


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 201 VVGGVVDYAKKKSYDDMLRQVQDSTTDDDLLRISEEMF 314
           VV   V+YAK+ S+D +L        +D  L  S E F
Sbjct: 418 VVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKF 455


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 15  YTFNPKMRIILILLVSLGLCHADDIAQAAGQIFNSIL 125
           Y F+P +  ++ + ++LGL  A  IA    Q F S L
Sbjct: 305 YDFSPGISGLMYISITLGLFSAVFIAMPINQKFYSYL 341


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 153 GQQGNTAQNTLQQIGTVVGGVVDYAKKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINN 332
           G+Q   A   L+QI  +     ++  KK YDDML+  Q      + L I++      I N
Sbjct: 62  GEQNEWAFKALKQITKI-----NFQLKK-YDDMLQSYQRLLGYTNWLSITKNYSEKSIYN 115

Query: 333 AFNYIQS 353
              Y  S
Sbjct: 116 IVEYASS 122


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 246 DMLRQVQDSTTDDDLLRISEEMFNADINNAFNY 344
           D+ RQV       DL+R+ +  F  D  N F++
Sbjct: 349 DLGRQVNSEAHMVDLVRLKQGSFALDDENCFDF 381


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 54  LVSLG-LCHADDIAQAAGQIFNS 119
           L++LG LC   DIA AA QI+++
Sbjct: 663 LMALGTLCTVPDIALAASQIYHA 685


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 15  YTFNPKMRIILILLVSLGLCHADDIAQAAGQIFNSIL 125
           Y F+P +  ++ + ++LGL  A  IA    Q F S L
Sbjct: 305 YDFSPGISGLMYISITLGLFSAVFIAMPINQKFYSYL 341


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 395 RRSSDMGEVLPCKLTLDVVERIVY 324
           R SS + EV  CK +LDVV R +Y
Sbjct: 235 RGSSSIPEVRKCKGSLDVV-RFIY 257


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 15  YTFNPKMRIILILLVSLGLCHADDIAQAAGQIFNSIL 125
           Y F+P +  ++ + ++LGL  A  IA    Q F S L
Sbjct: 305 YDFSPGISGLMYISITLGLFSAVFIAMPINQKFYSYL 341


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 21  FNPKMRIILILLVSLGLCHAD---DIAQAAGQIFNSILPNLIS 140
           F+P+ R++L LLV  G  H     DI  A  + FN ++  L S
Sbjct: 236 FSPQYRVLLSLLVGEG-NHEPINWDIENAIQKYFNPLIEQLAS 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,182
Number of Sequences: 5004
Number of extensions: 28213
Number of successful extensions: 81
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)