Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_H04
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 29 1.0
04_04_0259 - 23993673-23994139,23994505-23994670 29 1.8
05_04_0344 + 20442041-20442374,20443115-20443210,20444512-204446... 28 2.4
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 3.1
07_01_0791 - 6165069-6165165,6165288-6165346,6165379-6165432,616... 27 4.1
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 27 5.5
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738... 27 5.5
12_01_0144 - 1097579-1097604,1097940-1098127,1098567-1098720,109... 26 9.6
11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413 26 9.6
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 26 9.6
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120... 26 9.6
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 252 ACHRSFSF*HNQRRHRQPYRFVAMYSEPYSLAVQSQN*ILNLEGYC*IFDQP 97
AC + + NQ RH Q + Y++ Y + ++ Q + + G+ FD P
Sbjct: 371 ACEMAVVWIQNQLRHNQTRELILQYADQYVVKLEQQGQTVCISGFM-AFDVP 421
>04_04_0259 - 23993673-23994139,23994505-23994670
Length = 210
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 42 ILILLVSLGLCHADDIAQAAGQIFNSILPNLI 137
+L+LLV LG CH A AAG +++ L+
Sbjct: 15 LLLLLVVLGACHVTPAAAAAGARLSALAKALV 46
>05_04_0344 +
20442041-20442374,20443115-20443210,20444512-20444633,
20444781-20445029,20445300-20445549,20446036-20446262
Length = 425
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 75 HADDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVVGG 212
H + A AA I ++ N + S QQ + TLQQI +GG
Sbjct: 165 HGVNYASAAAGILDNTGQNFVGRSPFNQQIKNFEATLQQISGKLGG 210
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 267 DSTTDDDLLRISEEMFNADINNAFNYIQ 350
D T D L +S EM+ D NN +Y+Q
Sbjct: 673 DMLTIRDALEVSAEMYKKDPNNVQDYVQ 700
>07_01_0791 -
6165069-6165165,6165288-6165346,6165379-6165432,
6165475-6165516
Length = 83
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 238 ATMTCYVKYRILRRTTTCYGLARRCSMRI 324
AT+T Y ++ LR+T + A RCSM +
Sbjct: 49 ATVTNYGEFNSLRKTVVGWQAASRCSMAV 77
>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 27.1 bits (57), Expect = 5.5
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +3
Query: 81 DDIAQAAGQIFNSILPNLISNSVTGQQGNTA--QNTLQQIGTVVG-GVVDYAKKKSYDDM 251
D+I +A +FN +L L +T +G T +NTL + + VG V++ +K D+
Sbjct: 1200 DEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDL 1259
Query: 252 LRQVQDSTTDDDLLRISEEM 311
+DS+ + EEM
Sbjct: 1260 DYDEKDSSYSRIKSLVVEEM 1279
>10_06_0083 +
10471648-10471806,10473261-10473343,10473384-10473810,
10475806-10475932,10476329-10476471,10476687-10476749,
10476833-10476898,10477047-10477085
Length = 368
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 26 SQNENNFNITGFSRAMSCR*HSSSGWSNI*QYPSKFNI*FCDWTA 160
S+ F FSR+MSC HS + +S+ + +K ++ + TA
Sbjct: 280 SRQHRGFQTKSFSRSMSCDSHSKASFSSSSRAHTKVDLSKLEMTA 324
>12_01_0144 -
1097579-1097604,1097940-1098127,1098567-1098720,
1098825-1099092,1099310-1099550,1099669-1099833,
1099898-1100298
Length = 480
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 332 IVYIRI-EHLLANP*QVVVRRRILYLT*HVIVAFLFSIINDATDNRTDLLQCILSRIPLL 156
++ +RI H+L +V+ RILY A F + D + T+L +C L R+PLL
Sbjct: 257 LIPLRIFAHILPFECYIVLGPRILYRDIASHEAS-FRMKQDEQQHATELQRCCLMRLPLL 315
Query: 155 S 153
+
Sbjct: 316 N 316
>11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413
Length = 451
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +3
Query: 201 VVGGVVDYAKKKSYDD------MLRQVQDSTT-DDDLLRISEEMFNADINNAFNY 344
V G + DYA+++ Y+D +++ +DS T D+ L + E +D + F+Y
Sbjct: 371 VDGNMADYAQRQIYNDQDNGGVLMQGPEDSATFPDNFLMLDEMAAGSDDASGFDY 425
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 78 ADDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVV 206
ADD+A A + N+I+P + G Q T L + V
Sbjct: 245 ADDVADAVYSVLNTIVPTSLQLIAMGHQMVTINPLLSVVAATV 287
>04_03_0784 -
19610370-19611548,19611830-19611919,19612001-19612076,
19612917-19613134,19613333-19613548,19613974-19614159,
19614242-19614364,19614456-19614571,19615126-19615588
Length = 888
Score = 26.2 bits (55), Expect = 9.6
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +3
Query: 81 DDIAQAAGQIFNSILPNLISNSVTGQQGNTA--QNTLQQIGTVVG-GVVDYAKKKSYDDM 251
D+I +A +FN +L L +T +G T +NTL + + VG V++ +K D+
Sbjct: 681 DEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDL 740
Query: 252 LRQVQDSTTDDDLLRISEEM 311
+D++ + ++EE+
Sbjct: 741 DYDEKDTSYNRIKSLVTEEL 760
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,679,898
Number of Sequences: 37544
Number of extensions: 174648
Number of successful extensions: 491
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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