Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H02
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa...    27   3.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    26   4.1  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    26   4.1  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   9.5  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPBC1711.14 |rec15||meiotic recombination protein
           Rec15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 325 TYSISAHPLITRRLLLAAKPGQQHAK 248
           +YS+SA  L +R+L + A+  QQH K
Sbjct: 2   SYSVSAAQLWSRKLAMQAEDMQQHQK 27


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 265 GQQHAKQYNIHTLWKPYHISNLRSPSLYESQ 173
           G+QH    ++HT + P   S + S SL  SQ
Sbjct: 169 GKQHLSSLSLHTHFNPSSSSTVSSDSLESSQ 199


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 336 EQAKQTALDKHYYIPGSSVLI--DVEVHYNKVGKNKSRIFTTIPR 464
           ++ K+T  D    I    ++   DV+V  N++ K KS    T+P+
Sbjct: 607 DRIKRTGYDNDSIILSGPIITEQDVDVSINRIRKEKSNTIFTVPK 651


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 312 DIEYVFPSEQAKQTALDKHYYIPGSSVLIDVEVHY 416
           DIE V P E+A Q +  K  YI   S ++  +V +
Sbjct: 9   DIESVLPEEKAPQVSEAKKDYISQESTVLSGQVDF 43


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 253 AKQYNIHTLWKPYHISNLRSPSLYESQTNKRT 158
           AKQ N+ + W  + I+NL+S   Y   T + T
Sbjct: 294 AKQMNVESDWPAFVIANLKSMLKYPFPTTELT 325


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 521 DYSSLVIYSPQRHRPSFTKSRYCREYSRFILAY--FIIMY 408
           D  SLV  +P  +   F   R C +Y   +L Y  FII Y
Sbjct: 30  DTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELFIIYY 69


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/57 (21%), Positives = 27/57 (47%)
 Frame = +2

Query: 95   ILNNHKHDKLYGFEVITILEVSPFVRLRLV*AWRS*VRNVVRFPESMYVVLFSVLLA 265
            I+   +HD++     I   +++  VR   +  W++ V N  R    +   L S++++
Sbjct: 1857 IIGQERHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVS 1913


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 453 TIPRFSEGRPVTLGTIDNQGRIVGY-PDYSWHDNQE 557
           T PR++ GRPV L    N+ +++ Y P+Y+   ++E
Sbjct: 23  TSPRYTAGRPVIL----NENQLIRYLPNYTNKGDEE 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,297
Number of Sequences: 5004
Number of extensions: 61993
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)