Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_H02
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704...    29   3.2  
01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430...    29   4.3  

>01_06_0878 -
           32669790-32669846,32670206-32670299,32670384-32670499,
           32670786-32671096,32672243-32672364,32672754-32672870,
           32672982-32673054,32673416-32673542,32673659-32673727,
           32673811-32674170,32674493-32674633
          Length = 528

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 557 FLVIMPGVVRVSDYSSLVIYSPQRHRPSFTKSRYCREYSRFIL 429
           +L  MP     S++SS+ I  P   R  +T++RY +EYS  ++
Sbjct: 243 YLYPMPVYGEASNHSSVSIEEPDYSR--YTRARYMKEYSERVI 283


>01_05_0681 -
           24242485-24242560,24242721-24242785,24242874-24243029,
           24243073-24243121,24243291-24243366,24243456-24243666,
           24244038-24244160,24244245-24244363,24244439-24244532,
           24245123-24245233,24245336-24245392
          Length = 378

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 110 YDYSKYFISSKDIGIRLSRPSDYNVLLRTPT 18
           Y   +YF  +K   +    PSD + LLRTPT
Sbjct: 160 YSRPRYFCLAKREPVSFQNPSDNSKLLRTPT 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,591,531
Number of Sequences: 37544
Number of extensions: 364234
Number of successful extensions: 800
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)