Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_G23
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0521 - 19955475-19956076,19957146-19958403 32 0.45
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 32 0.45
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 30 1.4
06_03_0197 + 17794418-17794771,17795040-17795549 30 1.4
01_06_0918 + 32990106-32992196 29 2.4
07_01_0039 - 306384-306551,306645-306749,306845-306949,307030-30... 29 4.1
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 5.5
01_01_0046 - 331758-332627 28 5.5
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 27 9.6
>12_02_0521 - 19955475-19956076,19957146-19958403
Length = 619
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 368 EQEFCTIRSNKTKEVNKTVLPDEEQGNLAEVEVNYVKKFQKFQDKKLRL 514
E E + +S + +E+ + + P E +AEV VKK + ++K+RL
Sbjct: 420 ELELDSPKSTENEEIGRLITPQEACNRIAEVVHEAVKKMELVAEEKMRL 468
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 31.9 bits (69), Expect = 0.45
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Frame = +2
Query: 47 NCYISALDNGLFTIGAPHAAGEGPSPEEIFTAFPAGDNKFALKS---GYGKYLGVTKDGV 217
N Y+ A G + A A G E F + +N F LK+ ++GV +GV
Sbjct: 56 NTYLCAEHGGGDIVVADRTAASG---WETFKLWRVDENTFNLKAIDDSAVHFVGVDGNGV 112
Query: 218 VIGRSDAVGPMEQWEPVWQD---GRTAILSSVNKFMSVSSTDDSVVA---QSTSAGEQEF 379
V+ + GP E + V D R I +S KF+ +T SV A + TS G+ +
Sbjct: 113 VVATAATPGPSETFVIVRSDRDNSRIRIRASNGKFLQAKTT-VSVTADHGEGTSWGDDDP 171
Query: 380 CTIRSNKTKEV 412
N+ +++
Sbjct: 172 SVFAINRGEKL 182
>12_01_0433 -
3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 263 PVWQDGRTAILSSVNKFM-SVSSTDDSVVAQSTSAGEQ---EFCTIRSNKTKEVNKTVLP 430
P ++ T L + F S + DD VV +ST G + E+C S T+EVN+
Sbjct: 753 PCAKESTTDALQEIISFEESNADADDMVVRESTQDGNEGCHEYCNDSSASTQEVNRDNAT 812
Query: 431 DEE 439
EE
Sbjct: 813 VEE 815
>06_03_0197 + 17794418-17794771,17795040-17795549
Length = 287
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = -2
Query: 411 TSLVLLLRIVQNSCSPAEVDCA-TTLSSVELTDMNLLTELNI--AVLP--SCHTGSHCSI 247
+ LVL + CSPA C +T+++ + T + + A +P H G +
Sbjct: 75 SQLVLTSAAFRGQCSPATAYCCCSTIAATKSTSLACPNAKAVRKAAVPCGEAHAGPGVEV 134
Query: 246 GPTASDLPITTPS 208
G S +PIT PS
Sbjct: 135 GGCDSPIPITPPS 147
>01_06_0918 + 32990106-32992196
Length = 696
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 228 LPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGA 91
LP P P YFP PD L++P + SS +GP + CG+
Sbjct: 638 LPSLPPKMPVPSYFPPPD----LVAPV-SVEGTSSTDGPGVSECGS 678
>07_01_0039 -
306384-306551,306645-306749,306845-306949,307030-307111,
307457-307656,307754-307915,308043-308152,308255-308594,
308675-308749,308823-309032,309140-309343,309443-309562,
309643-309752,309832-309976,310716-310943
Length = 787
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Frame = +2
Query: 299 SVNKFMSVSSTDDSVVAQSTSAGEQEFCTIRSNKTKEVNKTVLPDEEQ---GNLAEVEV- 466
S K M+ S + A + S +E C+ ++ + K + + E+ +L +E
Sbjct: 315 STYKEMTGKSVAELDNAMTRSTALEETCSSQAERIKTLELQLASANEKLKRSDLTTMETM 374
Query: 467 -NYVKKFQKFQDKKLRLNDGSVSELKRAKLEGNLHETLL 580
Y K+ + +D +LRL + L L LH T+L
Sbjct: 375 TEYEKQKRMLEDLQLRLEEAEQQILDGENLRKRLHNTIL 413
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.3 bits (60), Expect = 5.5
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Frame = +2
Query: 278 GRTAILSSVNKFMSVSSTDDSVVAQSTSAGEQEFCTIRSNKTKEVNKTVLPDEE----QG 445
G ++ +N + ++ S E + +RS K V KT + D+E
Sbjct: 846 GLKKTVAELNSMKDSALLQQQKSSEKVSYLEAQVLVVRSEMEKMVQKTQMLDQELEHKNK 905
Query: 446 NLAEVEVNYVKKFQK---FQDKKLRLNDGSVSELKRAKLEGNLHETLLDRRSKMKADR 610
++E++ + ++ QK + LRL D + K AK + E L ++ ++++ DR
Sbjct: 906 EISELQNSLQEQVQKCILAETSLLRLEDLHTNSQKEAKTLAHDLERLSEQLTEVENDR 963
>01_01_0046 - 331758-332627
Length = 289
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +2
Query: 275 DGRTAILSSVNKFMSVSSTDDSVVAQSTSAGEQEFCTIR---SNKTKEVNKTVLPDEEQG 445
DG+ + + +N +V S ++S++ S+ +G ++ S+ +K +KT +++Q
Sbjct: 185 DGKGGVKAMINS--NVQSINNSLLLHSSCSGGDLGVHLKLKLSSNSKSKSKTKSKEKQQH 242
Query: 446 NLAEVEVNYVKKFQKFQDKKLRLNDGSVSELKRAKLEGN 562
N+ N KK Q+KK + A +GN
Sbjct: 243 NVVADTSNKEKKPDSSQEKKEAGTSAAKPNKPSAAAKGN 281
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 287 AILSSVNKFMSVSSTDDSVVAQSTSAGEQEFCTIRSNKTKEVNKTVL 427
A L S ++FM V DDS+ STS E T RS TKE + +V+
Sbjct: 1159 AKLQSEDRFMDVE--DDSISEVSTSFSEMSAYTTRS--TKESSASVI 1201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,592,290
Number of Sequences: 37544
Number of extensions: 362222
Number of successful extensions: 1059
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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