Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G21
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873...    29   2.1  
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573...    28   3.6  
10_08_0755 - 20329127-20329189,20329276-20329389,20329465-203296...    27   8.4  
03_01_0159 + 1298002-1298070,1298181-1298264,1300354-1300506,130...    27   8.4  

>03_06_0292 -
           32886148-32886354,32886997-32887154,32887265-32887378,
           32887660-32887924
          Length = 247

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +1

Query: 133 LSVPSGLGC----ATVIYPDSAALMAAQIIGLQDYLIWARLR 246
           +S   GLGC     TVI+  +A + AA +IGL  Y  WA  R
Sbjct: 114 ISFSVGLGCLSKNGTVIF-QAAGMTAAIVIGLTCYTFWAAKR 154


>10_08_0165 +
           15356748-15356811,15357113-15357186,15357311-15357394,
           15357508-15357602,15357737-15357790,15357791-15357896,
           15358236-15358277,15358585-15358674,15358788-15358984,
           15359355-15359413,15360166-15362252
          Length = 983

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 166 VIYPDSAALMAAQIIGLQDYLIWARLRVKQL 258
           V+ P +A L+A  ++    +L+W RLR  +L
Sbjct: 598 VVIPVAAPLLALAVVAGVSFLVWRRLRYAEL 628


>10_08_0755 -
           20329127-20329189,20329276-20329389,20329465-20329617,
           20331790-20332035
          Length = 191

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +1

Query: 94  PPSDKLVQDIWSSLSVPSGLGCATVIYPDSA---ALMAAQI-IGLQDYL 228
           PP  K  Q  +     PSG  C +++  DS    A+   QI +G+QD L
Sbjct: 104 PPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLL 152


>03_01_0159 +
           1298002-1298070,1298181-1298264,1300354-1300506,
           1300589-1300702,1300814-1300876
          Length = 160

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +1

Query: 94  PPSDKLVQDIWSSLSVPSGLGCATVIYPDSA---ALMAAQI-IGLQDYL 228
           PP  K  Q  +     PSG  C +++  DS    A+   QI +G+QD L
Sbjct: 73  PPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLL 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,861,323
Number of Sequences: 37544
Number of extensions: 267870
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)