Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G20
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    29   0.81 
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    27   1.9  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    27   1.9  
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    26   4.3  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   7.6  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   10.0 
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    25   10.0 
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   10.0 

>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +1

Query: 346 KMICLKRSRALHRRSNTIDYCCTTTSQLACTHHHRPRSSRTVLISLTIFCSS*TTPANQE 525
           K   L RS +LH RS +           + +++H P S  TVL S  +  SS   P   +
Sbjct: 145 KSSTLSRSISLHLRSESAPISLPIHLYKSYSYNHSPSSLPTVLNSQAL--SSPPVPTTPD 202

Query: 526 NISSNWL 546
            +S+N L
Sbjct: 203 EVSTNRL 209


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 375 AAPKIEYNRLLLHDDQSASLYPPSPP 452
           AA K+E N L L  D     +PP+PP
Sbjct: 209 AAEKVEDNTLTLFSDVERYSHPPTPP 234


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
 Frame = +1

Query: 334 SLTPKMICLKRSRALH-----RRSNTIDYCCTTTSQLACTHHHRPRSSRTVLISLTIFCS 498
           S T    C K+S  LH      ++N +    +T S    T  H P +S   LIS T  C 
Sbjct: 49  STTSWRACRKKSAPLHCPSTNGKTNVLPSYASTPSLSPMTSSHFPYASDGTLISATNHCD 108

Query: 499 S*T-----TPANQENISSNWLEEKVELPIF----DHIPERVEPTPSSGCSSTDSHTLGPS 651
             +      P N    S +       +P +            P   S  SS  S ++G S
Sbjct: 109 DCSYNPHYLPVNSNGSSPSHTSSLDSIPGYASGSGPFKTPYRPVAVSESSSRSSFSMGSS 168

Query: 652 TYRSTT 669
            + S+T
Sbjct: 169 EFASST 174


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 198 SVTDVIGECSCGRTKLS 148
           S+T+V GE  CG+T++S
Sbjct: 114 SITEVFGEFRCGKTQMS 130


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 484 TIFCSS*TTPANQENISSNWLEEKVELPIFDHIPERVEPTPSSGCSSTDSHTLGPSTYRS 663
           T F    T+PA   +IS          P  +   + +  TP++   ++ SH+  P+T+ S
Sbjct: 80  TSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQLNSPSHSYEPTTFPS 139

Query: 664 TTA 672
           TT+
Sbjct: 140 TTS 142


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 539 LEEIFSWFAGVV*LLQKIVREISTVRLDLGR*WW 438
           +E +F W+A ++  L  IV  I ++   LG  +W
Sbjct: 455 IEIVFIWYAQILWYLVFIVSVILSIYFQLGSTYW 488


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 487 IFCSS*TTPANQENISSNWLEE 552
           + C S T+PA+ EN+   W  E
Sbjct: 79  LVCFSVTSPASFENVKEKWFPE 100


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/29 (27%), Positives = 22/29 (75%)
 Frame = +3

Query: 285 SGLLTDEQCLELLDLDIFNTEDDLLKTFP 371
           +G + +++  +L+D++  N +DD++++FP
Sbjct: 181 NGDVKEKKNADLMDIESENKKDDIVESFP 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,947
Number of Sequences: 5004
Number of extensions: 58812
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)