Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G20
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1465 - 26729872-26730909                                         29   3.4  
07_03_1349 + 25951445-25951774,25953301-25953639                       29   3.4  
04_04_0040 + 22322839-22324173                                         29   4.5  
12_01_1076 + 11184047-11184270,11186178-11186352,11186554-111866...    28   5.9  
08_02_0636 + 19567654-19568859                                         28   5.9  
08_01_0491 + 4290881-4291228,4291298-4291393                           28   5.9  
07_03_0298 + 16384922-16385383,16387540-16388562                       28   7.8  
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70...    28   7.8  
03_06_0776 - 36176390-36177589                                         28   7.8  

>07_03_1465 - 26729872-26730909
          Length = 345

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 354 DHLRC*RCPNRAALNIVHQ*VGRWPKPTTTPSDS 253
           D  RC    + A  NIVH    RW   TT+PS S
Sbjct: 170 DLSRCFLAGDSAGGNIVHHVAQRWAASTTSPSSS 203


>07_03_1349 + 25951445-25951774,25953301-25953639
          Length = 222

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 366 FPSAAPKIEYNRLLLHDDQSASLYPPSP 449
           F SAA     +RLL++  QSA +YPP P
Sbjct: 66  FSSAATTDLDHRLLVYSPQSAPVYPPPP 93


>04_04_0040 + 22322839-22324173
          Length = 444

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 289 AYSLMNNV*SCSIWTSLTPKMICLKRSRALHRRSNTIDYCCTTTSQLACT 438
           AYS + +  S  +WT   P + C K+S  +   S++  Y     S  +C+
Sbjct: 107 AYSAIVDTGSDLVWTQCKPCVDCFKQSTPVFDPSSSSTYATVPCSSASCS 156


>12_01_1076 +
           11184047-11184270,11186178-11186352,11186554-11186637,
           11186712-11186953,11187029-11187266,11187814-11187893,
           11187968-11188052,11188148-11188279,11188358-11188471,
           11189550-11189594,11189840-11189924,11190043-11190102,
           11190178-11190317
          Length = 567

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 574 DHIPERVEPTPSSGCSSTDSHT 639
           D +PE +EP+P S  SS DS +
Sbjct: 543 DQLPESLEPSPHSSISSEDSQS 564


>08_02_0636 + 19567654-19568859
          Length = 401

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 568 IFDHIPERVEPTPSSGCSSTDSHTLGPST 654
           +FD +P   EPT +S    T SH L P T
Sbjct: 69  VFDEMPSNKEPTTASVLHVTMSHVLYPVT 97


>08_01_0491 + 4290881-4291228,4291298-4291393
          Length = 147

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 164 PQLHSPITSVTDPSGLKLAPVSLHHINNECE--SLGVVVGF 280
           P+ H    +VTD +    A  + HH+ +E +  S  VV GF
Sbjct: 78  PRPHGATAAVTDTTSAAAAAAAAHHLQHEADGGSKHVVTGF 118


>07_03_0298 + 16384922-16385383,16387540-16388562
          Length = 494

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 634 GNRLSYNHLKVLAPHAPEYDQKLVVPPFPPANWR 533
           G   +Y  +KV+  H     +  +V PFP  +WR
Sbjct: 439 GESFAYTQIKVIWSHLLRNFELKMVSPFPETSWR 472


>04_01_0070 -
           706640-706747,707221-707307,707397-707502,707585-707693,
           707766-708145,708508-708601,709351-709475,709633-709674,
           710822-710892,710979-711060,711157-711277,712404-712713
          Length = 544

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 652 LKDQEYGNRLSYNHLKVLAPHAPEYDQKLVVPPFPPANWR 533
           L D   G+RL++  L   A  AP +   L  PPFPP N R
Sbjct: 15  LLDINDGDRLAFFRLTPAAS-APPFLLDLASPPFPPKNPR 53


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 315 ELLDLDIFNTEDDLLKTFPSAAPKIEYNRLLLHDDQSAS 431
           +L+DLD+   + D  +  P +AP +  N    HDDQ A+
Sbjct: 148 DLIDLDL---DGDGHQLPPGSAPSMHRNPFFFHDDQQAA 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,478,242
Number of Sequences: 37544
Number of extensions: 444952
Number of successful extensions: 1318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)