Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_G19
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 182 4e-47
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 41 1e-04
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 39 4e-04
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 34 0.016
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 31 0.15
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 30 0.20
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 0.80
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 3.2
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 5.6
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 25 5.6
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 5.6
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 7.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 7.4
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 25 7.4
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 7.4
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 182 bits (442), Expect = 4e-47
Identities = 80/138 (57%), Positives = 109/138 (78%)
Frame = +2
Query: 50 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDLI 229
++++NLY+ +E R ++PKTF+ ++S+ LYEKRFGPYF PV+AG+ DNTP++C D I
Sbjct: 68 RYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSN-DNTPFICGFDSI 126
Query: 230 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVXAAD*DAISGWGAVV 409
GC + EDF+VSGT +EQLYGMCE+++EPNL+PD+LFETISQAL+ A D D ISGWG VV
Sbjct: 127 GCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGCVV 186
Query: 410 YIIEXDKITEKHVQTRMD 463
Y+I DK ++ V+ R D
Sbjct: 187 YVITADKCIKRLVKGRQD 204
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 47 IKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 187
I+ R++LY R M ++ + M+ LLY KRF PY++ +AG+D
Sbjct: 72 IQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGID 118
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 39.1 bits (87), Expect = 4e-04
Identities = 29/135 (21%), Positives = 61/135 (45%)
Frame = +2
Query: 38 ASEIKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCN 217
A +K+ +++Y ++ T + + S + Y+ + ++AG D V +
Sbjct: 80 ADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGD-VYS 137
Query: 218 MDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVXAAD*DAISGW 397
+ L G ++ + + G+ S +YG C+A + N+ +E E + A+ A + D SG
Sbjct: 138 IPLGGSLHK-QPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGG 196
Query: 398 GAVVYIIEXDKITEK 442
+ I+ D + K
Sbjct: 197 TIRMVILNKDGMERK 211
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 33.9 bits (74), Expect = 0.016
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 MKPKTFSAMLSNLLYEKR--FGPYFIEPVIAGLDPYDNTPYVCNMDLIG 232
++P LS +LY +R PY+ + ++AG+D + PYV DL G
Sbjct: 118 LQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRG 166
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 30.7 bits (66), Expect = 0.15
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +2
Query: 152 PYFIEPVIAGLDPYDNTPYVCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPD 331
P+ + +IAG D DNTP V + G N + + G S+ E W+ L D
Sbjct: 127 PFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAI-GRASKAAREYLEKNWKEGLSRD 185
Query: 332 ELFETISQALV 364
E +L+
Sbjct: 186 ETIHLAVSSLL 196
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 30.3 bits (65), Expect = 0.20
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 271 CSRHYKILGLI-GATDQIHITNIWS 200
CSR+Y+ LI GATD H +IWS
Sbjct: 194 CSRYYRAPELIFGATDYTHAIDIWS 218
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 28.3 bits (60), Expect = 0.80
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -2
Query: 399 PQPDMASQSAAXTKACEIVSKSSSGFRLGSQRASHIPYNCSEHVPDTTKSSGSLGQPIKS 220
P PD ++ A + +S SSS F+ +Q SH+P N + VP +K I +
Sbjct: 267 PTPDNSAVIEAARRTYSSISSSSSPFKKKTQ--SHLP-NRTTEVPSISKQLSKSSTSIAT 323
Query: 219 ILQTYGVLS 193
+ + +S
Sbjct: 324 VAPSLASVS 332
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -2
Query: 426 SXSMM*TTAPQPDMASQSAAXTKACEIVSKSSSGFRLGSQRASHIPYNCSEHVPDTTKSS 247
S S TT+P +S S++ + + S SSS S +S + S ++ SS
Sbjct: 146 SSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 205
Query: 246 GSLGQPIKS 220
S+ PI S
Sbjct: 206 SSV--PITS 212
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 65 LYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 208
+Y K N+ + + S +L + + +EP A L P TPY
Sbjct: 583 IYSYKRNKNTEVQQRSVEFHLILNDSKLSKTILEPTPAPLPPPRTTPY 630
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 38 HGLCVSARPGSP 3
HGLC S RPG P
Sbjct: 151 HGLCFSVRPGIP 162
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = -2
Query: 324 FRLGSQRASHIPYNCSEH----VPDTTKSSGSLGQPIKSI 217
FRL S++ SH P C + P LGQ +KS+
Sbjct: 285 FRLFSEKISHNPTQCLRYERGGTPLLASGRDKLGQQLKSV 324
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 312 SQRASHIPYNCSEHVPDTTKSSGSLGQPIKS 220
S+R+SH Y+ S HVP +S + KS
Sbjct: 582 SERSSHSSYHNSSHVPTAAFNSPIMRTSTKS 612
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -2
Query: 174 ITGSMKYGPNLFSY----NKFDSIAEKVLGFIILFSFSSYKF 61
I S+KYG LFS+ N F + +++ ++SS+ F
Sbjct: 105 ILSSLKYGSTLFSWISVANAFGLLLLRLISIYDFLTYSSWSF 146
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 435 QRNMSKREWTSIFL*DMWY 491
++ + KR W +IF+ D WY
Sbjct: 367 EKTIRKRIWWAIFIADKWY 385
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = -1
Query: 322 QIGFPEGFTHSVQLFRACSRHYKILGLIGATDQIHITNIWSV 197
++G+ + F + LF S + +LG++ + + +W V
Sbjct: 54 ELGYKQEFRRQLSLFGIFSISFSVLGMLPSVASTLVFGLWYV 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,546
Number of Sequences: 5004
Number of extensions: 45551
Number of successful extensions: 149
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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