Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_G19
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 168 2e-42
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 36 0.026
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 36 0.026
U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 31 0.42
AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine re... 30 0.96
U39646-4|AAA80370.1| 215|Caenorhabditis elegans Hypothetical pr... 28 3.9
AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical ... 28 3.9
Z66562-3|CAD44123.1| 485|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z66562-2|CAB60289.1| 110|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z66562-1|CAA91464.1| 519|Caenorhabditis elegans Hypothetical pr... 27 6.8
AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical ... 27 6.8
AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical ... 27 6.8
AF068709-5|AAC19250.2| 332|Caenorhabditis elegans Serpentine re... 27 9.0
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 168 bits (409), Expect = 2e-42
Identities = 76/140 (54%), Positives = 96/140 (68%)
Frame = +2
Query: 44 EIKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMD 223
+I FR NLYEL+ENR +KP+ S M+SNL Y+ RFG YF EP++AGLD N PY+C MD
Sbjct: 66 KIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPYICCMD 124
Query: 224 LIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVXAAD*DAISGWGA 403
IGC + P DFV GT E L G+CE W N+KPDELFE +Q+++ + DA SGWGA
Sbjct: 125 TIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGA 184
Query: 404 VVYIIEXDKITEKHVQTRMD 463
VVY I DK+ ++ RMD
Sbjct: 185 VVYTITKDKVNVSTIKARMD 204
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 47 IKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDL 226
++ R++ Y M + +LS LY +RF PY+ ++AG+D + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGA-VFSYDP 169
Query: 227 IGC 235
IGC
Sbjct: 170 IGC 172
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 47 IKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDL 226
++ R++ Y M + +LS LY +RF PY+ ++AG+D + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGA-VFSYDP 169
Query: 227 IGC 235
IGC
Sbjct: 170 IGC 172
>U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical
protein F58F12.1 protein.
Length = 163
Score = 32.7 bits (71), Expect = 0.18
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 254 FVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVXAAD*DAISGWGAVV 409
FV SGT S + G C+ L E LK +E+ E+ ++A + AA SG G+ V
Sbjct: 91 FVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAA--QRASGEGSEV 140
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.42
Identities = 29/110 (26%), Positives = 50/110 (45%)
Frame = +2
Query: 65 LYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDLIGCPNE 244
LYEL+E + S +N LY R + ++AG D P + +D G +
Sbjct: 136 LYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD--KKGPQIFKVDSEGDRCQ 193
Query: 245 PEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVXAAD*DAISG 394
+ V G+ S YG+ + ++P + DE + +A++ A D+ SG
Sbjct: 194 LKVCSV-GSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGSG 242
>AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine
receptor, class t protein27 protein.
Length = 319
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 288 YNCSEHVPDTTKSSGSLGQPIKSIL-QTYGVL 196
YNCS H P+ +PI I+ TYG+L
Sbjct: 16 YNCSAHTPEEWSELNGYKRPIAGIIDMTYGIL 47
>U39646-4|AAA80370.1| 215|Caenorhabditis elegans Hypothetical
protein F47B7.6 protein.
Length = 215
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 276 EHVPDTTKSSGSLGQPIKSILQTYGV 199
+H+P +SS S+G P SILQ G+
Sbjct: 134 DHMPHDYQSSNSMGYPTPSILQVGGM 159
>AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical
protein Y44A6D.5 protein.
Length = 393
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 56 RMNLYEL-KENRIMK--PKTFS-AMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMD 223
R ++ EL +E +MK K F+ A LS ++EKR +F+ A + P Y C+ +
Sbjct: 290 RQSIVELAQEMNLMKVSEKNFTMAQLSRAVHEKRVHEFFVSGTAANVGPVSEIVY-CDKE 348
Query: 224 L 226
L
Sbjct: 349 L 349
>Z66562-3|CAD44123.1| 485|Caenorhabditis elegans Hypothetical
protein F42E11.2c protein.
Length = 485
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -1
Query: 217 ITNIWSVIVRIKTSYHWFNEI----WSESLF 137
+ N +SVI R+ +HW N++ WS F
Sbjct: 7 LINFYSVIPRLNFKFHWTNDVFNLEWSSEYF 37
>Z66562-2|CAB60289.1| 110|Caenorhabditis elegans Hypothetical
protein F42E11.2b protein.
Length = 110
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -1
Query: 217 ITNIWSVIVRIKTSYHWFNEI----WSESLF 137
+ N +SVI R+ +HW N++ WS F
Sbjct: 7 LINFYSVIPRLNFKFHWTNDVFNLEWSSEYF 37
>Z66562-1|CAA91464.1| 519|Caenorhabditis elegans Hypothetical
protein F42E11.2a protein.
Length = 519
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -1
Query: 217 ITNIWSVIVRIKTSYHWFNEI----WSESLF 137
+ N +SVI R+ +HW N++ WS F
Sbjct: 7 LINFYSVIPRLNFKFHWTNDVFNLEWSSEYF 37
>AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical
protein Y47H9C.9 protein.
Length = 829
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 269 TCSEQLYGMCEALWEP 316
TCS+ ++G+C LW+P
Sbjct: 570 TCSKSVHGVCCGLWDP 585
>AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical
protein R08F11.2 protein.
Length = 333
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 324 FRLGSQRASHIP-YNCSEHVPDTTKSSGSLGQPIKSIL-QTYGVL 196
F+ GS + IP YNCS H P+ + +P+ + TYG++
Sbjct: 5 FKYGS--IAEIPLYNCSAHTPEEWSERDGVRRPLYGLADMTYGLV 47
>AF068709-5|AAC19250.2| 332|Caenorhabditis elegans Serpentine
receptor, class t protein29 protein.
Length = 332
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 324 FRLGSQRASHIP-YNCSEHVPDTTKSSGSLGQPIKSIL-QTYGV 199
F+ GS S IP YNCS H P+ + +P+ I YG+
Sbjct: 5 FKYGS--VSRIPLYNCSAHTPEEWSQRDGVRRPLYGIADMIYGL 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,221
Number of Sequences: 27780
Number of extensions: 253848
Number of successful extensions: 615
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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