Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G18
         (236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207...    27   1.6  
03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047...    27   2.1  
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420...    26   3.7  
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658...    26   3.7  
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120...    26   4.9  
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841...    26   4.9  
03_01_0196 + 1559190-1560395                                           25   6.5  

>06_03_0629 +
           22920206-22920291,22920430-22920527,22920657-22920796,
           22921596-22921626,22922025-22922128,22922439-22922560,
           22922651-22923050,22923245-22923268
          Length = 334

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 VRLQRWTSDESQSRNGKPFRRIWTISMGNSI 204
           + ++ W+S  S S    P R+ W +S+ N++
Sbjct: 61  IMIKLWSSGGSSSAGRAPLRKYWGVSITNTV 91


>03_06_0120 +
           31804301-31804412,31804525-31804631,31804714-31804756,
           31806069-31806187
          Length = 126

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 195 AHADSPDTTKWLSVS*LTLVTSPALKSYN 109
           AH D+ +T KW  ++   +VT   L +YN
Sbjct: 33  AHDDAHETAKWEKITYAGIVTCTLLAAYN 61


>11_01_0532 +
           4201374-4201401,4201475-4202652,4204316-4204670,
           4204791-4204864,4206965-4207056,4207500-4207573,
           4207680-4207822,4207889-4207909
          Length = 654

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 56  NAYGKCNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGLSAWAILSTLSFGAAEE 232
           N+ G C+D +  Q    +  D N G+ + ++ E   H  + GLSA A  + L F   EE
Sbjct: 578 NSEGICSD-SRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATKAKL-FADQEE 634


>08_02_1284 -
           25864049-25864202,25864690-25864880,25865053-25865895,
           25865953-25866896,25867052-25867190,25867259-25867334,
           25867666-25867788,25867869-25867952,25868145-25868235,
           25868448-25868532,25868620-25868784,25868872-25868928,
           25870141-25870302
          Length = 1037

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 92  QFLKRSLYDFNAGLVTRVNQETE 160
           QFL+++   FN  LV + NQ+TE
Sbjct: 412 QFLQQNNIQFNTALVPQQNQQTE 434


>03_03_0001 +
           13611070-13611172,13611812-13611873,13612001-13612072,
           13612158-13612394,13612473-13612650,13612731-13612863,
           13613686-13613845,13613925-13614078,13614159-13614262,
           13614354-13614512,13615399-13615467,13615543-13615611,
           13615772-13615909,13616044-13616124,13616805-13616933,
           13617717-13617864,13618007-13618017,13618094-13618234,
           13618314-13618439,13619164-13619220,13619355-13619453,
           13619540-13619762,13620236-13620480,13621325-13621438
          Length = 1003

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 134 VTRVNQETESHFVVSGLSAWAILSTLSFGAAE 229
           VTRV Q  E+H   S   +W + S  S GA E
Sbjct: 329 VTRVIQGYENHTFKSKFESWPVNSAGSAGAEE 360


>02_05_0997 +
           33382756-33382861,33383070-33383161,33383936-33384175,
           33384820-33384900,33384974-33385113,33385462-33385622,
           33385700-33385800,33385895-33385969,33386218-33386488,
           33386657-33386697,33386922-33387004,33387100-33387189,
           33387721-33387825,33388023-33388161,33388467-33388670,
           33388837-33388908,33389189-33389273,33389374-33389480
          Length = 730

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 166 FRRIWTISMGNSIDAIVW 219
           ++R+WTIS G  I +I W
Sbjct: 27  WQRLWTISPGKCITSICW 44


>03_01_0196 + 1559190-1560395
          Length = 401

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 222 APNDSVDRIAHADSPDTTKWLSVS*LTLVTSPALKSYN 109
           APND  D      +PD  K  S   +TL+   AL SYN
Sbjct: 226 APND--DAFDAKGAPDVKKMPSADLVTLLKYHALPSYN 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,131,121
Number of Sequences: 37544
Number of extensions: 71314
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)