Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G17
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   3.1  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   4.1  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   5.4  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   7.2  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    25   7.2  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   7.2  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   7.2  
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.2  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    25   7.2  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   9.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.5  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.5  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 452 QNNEQLRKSLNKKKLTRFLKNIF-RFFFQ 535
           Q N ++RKS  K+K  RF+++ F   FFQ
Sbjct: 620 QVNTEIRKSSRKQKAQRFIRDDFDTVFFQ 648


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 233 QIFFHNIMY*IIINKLWYIQMGMNLYQQSI 322
           QI  H  ++ +IIN + Y+  G+NL  + I
Sbjct: 389 QIQLHTDLFRMIINGVMYVHEGVNLIHRDI 418


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 539 ISEKKNERYFLEILLIFFCLNSFLIVH 459
           ISEK+++  F +I L    L+SF I+H
Sbjct: 608 ISEKESKAIFFQIALAVAHLHSFDIIH 634


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 289 YIPQFIYNYLVHNIVKKNL*RFSL*EKNIFILVYCQNFIIWINPCFVICSWLY 131
           ++P FIYN  +H +V  +   F      + +  Y    I W    FV   WLY
Sbjct: 450 FVPLFIYNCFIHKLVMGDKFEFL---PLMLLSTYAAWGIFW---SFVSLLWLY 496



 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 319 GLLIKIHSHLYIPQFIYNYLVHNIVKKNL*RFSL*EKNIFILVYC-QNFIIWINPCFVI 146
           GLLI  H H     F++  L+ +IV     +  L    IF  + C ++  +++ P + +
Sbjct: 143 GLLIIDHIHFQYNGFLFGLLLWSIVLAKPEKNMLLSAAIFSALICFKHIFLYVAPAYFV 201


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +2

Query: 236 IFFHNIMY*IIINKLWYIQMGMNLYQQSI*RNFLKTILDRWI--HEFYKFREHSLWSAII 409
           I F ++   I+++K  + +    LY+  +    L T     +  H F +FR  SL    +
Sbjct: 35  IEFLDLFLDIMLHKFLFREHIRGLYKAGVTSTSLNTESSSTLGPHHFTRFRSASLSLEDL 94

Query: 410 HNSRWPPFFQQRMFQ-NNEQLRKS---LNKKKLTRFLKNI 517
               WP F    + + +NEQ   S   L  K    +LKN+
Sbjct: 95  STVYWPNFGPLLLEELSNEQTINSSDLLLSKDRAAYLKNL 134


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 299 MNLYQQSI*RNFLKTILDRWIHEFYKFREHSLWSAIIHNSRWPPFFQQRMFQNNEQLRKS 478
           +N +Q++I    L TIL    + F+      +   +I  +R+ P FQQ ++   E  R+S
Sbjct: 555 LNSFQKAIFPQVLGTILIFLGNTFFPIMLRFIIWIMIRTTRFSPNFQQALYFLFEHPRRS 614


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/56 (19%), Positives = 31/56 (55%)
 Frame = -1

Query: 391 RMFSKFVKLMNPTVENCF*KVTLNGLLIKIHSHLYIPQFIYNYLVHNIVKKNL*RF 224
           ++ ++F +  + T+E+C   +  N   ++  S +++P+F    +  N+ +++L  F
Sbjct: 780 QLLNRFAEKGDKTMESCIDTLITNCCAMQSFSIMHLPKFFSITMSSNLSERSLVNF 835


>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 399 RPLYTIQDGLRFFNSECFRIM 461
           RPLYT      ++   CFRI+
Sbjct: 57  RPLYTTDTRTHYYLKNCFRIL 77


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 1   RVFFFFFCSKIIYSITKPY*IVFTKSINAPQSV 99
           R FFF FC  I  S T  +  V   S N P  V
Sbjct: 8   RRFFFLFCFIIRISCTGVFESVIKSSENVPDKV 40


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 130 YITNCRLQNKD 162
           Y+TNC L+NKD
Sbjct: 116 YLTNCNLKNKD 126


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 539  ISEKKNERYFLEILLIFFCLNSF 471
            IS K NE  FLE  ++F CL SF
Sbjct: 961  ISLKLNELPFLENWILFQCLLSF 983


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 26  PKSFIP*LNRIKSFLQNQ*TLHSRC 100
           P +F+   NRIKSF  +   LH+ C
Sbjct: 359 PLAFLASFNRIKSFSTDLNLLHAAC 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,247
Number of Sequences: 5004
Number of extensions: 47048
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)