Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G16
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    32   0.079
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    31   0.10 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.74 
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    28   1.3  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    28   1.3  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   3.0  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    26   3.9  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    26   5.2  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   5.2  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   9.1  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    25   9.1  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 497 FECPVCFDYVLPPILQCQSGHLVCSSCRPKL 589
           F C VC D  L P+     GH  C  C   L
Sbjct: 604 FNCSVCLDPCLAPVFIIPCGHFTCQECMSML 634


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +2

Query: 422 SSCSVPGVPALVNAPTAMSADLASLFECPVCFDYVLPPILQCQSGHLVCSSCRPKLSC-- 595
           SS     V   ++    +  +++   EC +CF  +  P++    GH  C  C  +     
Sbjct: 142 SSSYETAVAEFLHMEDLLQENVSRELECQICFGMLYDPVVS-PCGHTFCGPCLMQALTQS 200

Query: 596 --CPTCR 610
             CPTCR
Sbjct: 201 PQCPTCR 207


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 389 STNIKRRGASGSSCSVPGVPAL-VNAPTAMSADLAS 493
           S N +RR  S + CSVPG  AL   A T +S  L S
Sbjct: 230 SENCRRRYQSSAKCSVPGFNALGTIAETVLSKSLNS 265


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
 Frame = +3

Query: 534 PYSNVRVGTSYAPVAG------PSFLAAQP-AVVPSATYA 632
           P SN+RV T Y P AG      PS  AA P A +P++  A
Sbjct: 15  PVSNMRVNTRYEPTAGFSGTSVPSVQAANPSAYLPNSATA 54


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 425 SCSVPGVPALVNAPTAMSADLASLFECPVCFDY 523
           S S PG  +     TA++   A+  ECP+CF Y
Sbjct: 125 SNSTPGSISADYRTTAITTIYANAMECPICFLY 157


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +2

Query: 485 LASLFECPVCFDYVLPPILQCQSGHLVCSSC 577
           L    +C +C D V   ++    GH +C  C
Sbjct: 740 LIETLQCSLCMDVVAELLIIVPCGHFLCREC 770


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 474 CLLT*RLCSSALCVSTMS-CPPYSNVRVGTSYAPVAGPSF 590
           CLL  +L     C  T S     SN R+    AP  GPSF
Sbjct: 94  CLLRYKLLIKTFCCITYSKIENLSNTRMARLTAPSKGPSF 133


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 340 VHYPYYPARRTI*FIYSPPRLIF--SVWLLFSSKFP 239
           V+YPYY   R   F+ +P R ++  +VW  F++ FP
Sbjct: 427 VYYPYYEGVRRDIFLRNPDRSLYVGNVWPGFTT-FP 461


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +2

Query: 281 PWRAINELNSASSWIIRVVDWSFVDRRLLCARNGVM--STNIKRRGASGSSCSVPGVPAL 454
           PW  +++++++ +  I+ ++    + +   A N V   STN K    + +S S+ G P++
Sbjct: 678 PWAKVSDVSTSMAQEIQRMEKQNENLKSKVASNPVSQTSTNAKASTPALASGSIWGSPSV 737

Query: 455 VNAPTAMSADLAS 493
           +NA     A L S
Sbjct: 738 INAWANKPAALKS 750


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 383 VMSTNIKRRGASGSSCSVPGVPALVNAPTAMSA 481
           VMS N  R   + S C V G+ +++  PT  SA
Sbjct: 249 VMSKNSSRVLGTSSYCDVNGMDSIIFEPTESSA 281


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 114 INNSFIHCKQLISLSYVLNPML*FTSITANISVRIIRVGI 233
           + N F+ CKQL+ +++  +PML    IT  ISV ++   I
Sbjct: 545 LQNLFLWCKQLVEINF-KDPML----ITRLISVLVLFTSI 579


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 545 CQSGHLVCSSCRPKLSC--CPTCR 610
           C++ HL      PKLSC  C TCR
Sbjct: 10  CKAIHLKAIIEEPKLSCCHCETCR 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,703
Number of Sequences: 5004
Number of extensions: 58484
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)