Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G10
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    26   5.3  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   9.2  
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.2  

>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 391 NLLIFEFLILVGMGVDGGRREGC*VFGRYKSFRFLFL 501
           N L+  F+I+ G+G  G  +E   +  +Y SF F FL
Sbjct: 33  NALLALFIIVFGLGTIGLEKEIPPIAIKYGSFMFSFL 69


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 355 VSRKKYLSVIKKNLLIFEFLILVGMGVDGGRREGC*VFGRY 477
           +S+  YL  I + LL F+F  +  + +       C V GRY
Sbjct: 55  ISQNLYLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRY 95


>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 287 TN*LLFSKLLYCKNL 331
           TN +LFS+L+ CKNL
Sbjct: 5   TNEVLFSRLVVCKNL 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,293
Number of Sequences: 5004
Number of extensions: 53785
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)