Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G10
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0904 + 12290886-12291383                                         29   3.1  
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854...    28   5.4  

>03_02_0904 + 12290886-12291383
          Length = 165

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 445 RREGC*VFGRYKSFRFLFLNLNTVQIEFISIRPSQPLPSNR 567
           RRE   + GR  SFR ++  LN V   +IS  P+ P+P+ R
Sbjct: 108 RREKS-LLGR-PSFREMYSALNAVSGHYISFGPTAPIPNKR 146


>02_05_0070 -
           25584690-25584806,25585151-25585312,25585396-25585491,
           25585894-25585955,25586035-25586110,25586195-25586277,
           25586456-25586778,25586882-25586928,25587014-25587150,
           25587250-25587322,25588159-25588251,25588543-25588632,
           25588684-25588786,25588869-25588981,25589181-25589778,
           25589888-25590065,25590277-25590296,25590713-25590882,
           25591245-25591485,25592997-25593199
          Length = 994

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 311 VLKTIVSLCPRPLRM*TRSLPNTTFRIFAVSLYITNIYIKQILQYSCLSFKH 156
           +  ++VS C R L + T +L       +  S   +N Y K+ L+Y C    H
Sbjct: 58  IANSVVSRCSRVLALATETLQQNFEVDYPDSCKESNTYAKEFLEYCCHKALH 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,427,792
Number of Sequences: 37544
Number of extensions: 315004
Number of successful extensions: 771
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)