Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G10
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    29   2.8  
AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine re...    28   6.5  
Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 323 YNIVVLKTIVSLCPRPLRM*TRSLPNTTF-RIFAVSLYITNIYIKQILQYSCLSFKH*QQ 147
           ++I +++T+V   P        + P T+F  I  VSL    I I   L+Y   S K+   
Sbjct: 133 FSIALIRTLVIRNPMKTEYEKLTKPPTSFLAIIVVSLVFCPISISTFLEYDIFSEKYKST 192

Query: 146 -NEEIRLEYFLY 114
            N +  L Y+LY
Sbjct: 193 CNPKGVLSYYLY 204


>AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine
           receptor, class xa protein5 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 178 YCNICFI*MFVMYKETAKILNVVLGRLRVHIRSGRGHKLTIV 303
           +C +C I   V + E      +++G+++       G K+T+V
Sbjct: 262 FCIVCSINFLVYFVEARSTRELLIGKIKSRFSVSNGSKITVV 303


>Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical
           protein C25A1.5 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 509 IRYKLSSFLFAHPSPSPPTDSHFK*VVLHNYY 604
           + Y +  +   H SP P ++ HF+ V  HN++
Sbjct: 258 VTYDMVHYYLHHGSPRPRSNLHFRKVYHHNHH 289


>Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical
           protein K08E4.8 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 164 MTDRNIVIFVLYKCLLCIKRLQKF*TWYWVDYGFTSGAVADTN*LLFSKLLYC 322
           +TD+++ IF+ +    C +RL+    W+ V   + S  V D N +LF  + YC
Sbjct: 209 LTDKDVNIFLKHWICGCNRRLEYVHLWFKVSDIYQSDDV-DLN-ILFKNVDYC 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,753
Number of Sequences: 27780
Number of extensions: 303123
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)