Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G07
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   3.4  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   4.5  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 369 SSIHKLNI---NLIFLPIIDTYIVYHTLVSVSVNETVGFSMLM 250
           +S+ +LNI    L FLP    Y+V  T + +S N  V F +++
Sbjct: 502 NSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLII 544


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 375 TVSSIHKLNINLIFLPIIDTYIVYHTLVSVSVNE 274
           T+SS  KL  N     +IDT I+  + V++ ++E
Sbjct: 132 TISSSKKLEQNYSVTEVIDTNIITSSSVTLPISE 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,517
Number of Sequences: 5004
Number of extensions: 22987
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)