Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G07
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family pr...    28   2.3  
AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z80223-2|CAB02320.1|  344|Caenorhabditis elegans Hypothetical pr...    27   5.2  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    27   5.2  
Z82284-6|CAE17979.1|  342|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U61951-1|AAB03157.2|  530|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family
           protein 6 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 408 HQSCQNI*LNYTVSSIHKLNI 346
           HQ C+NI   Y  S+IH+LN+
Sbjct: 5   HQKCRNIDTVYLGSNIHRLNV 25


>AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical
           protein Y39G8B.3 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 126 QFFFSFIIQ-TPQTIIINLIYYLSYFVIIIMIIYEKF 19
           +F F FI+  TP  + + LI +   + + I  I+EKF
Sbjct: 201 EFLFMFIVAATPNVLAVTLILFARQYNLKITRIHEKF 237


>Z80223-2|CAB02320.1|  344|Caenorhabditis elegans Hypothetical
           protein F26D10.8 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 150 SIVYNVSHQFFFSFIIQTPQTIIINLIYYLSYFV 49
           S V N+  QFF++ ++QT   +I+  I    YFV
Sbjct: 234 SAVNNLQLQFFYALVLQTAIPLILMHIPITIYFV 267


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 381 NYTVSSIHKLNINLIFLPIIDTYIVYHTLVSVSVNETVGFSMLM 250
           N T+++I ++ IN   +P+      +HTL+    N+T G S LM
Sbjct: 236 NNTMNAI-RIPINSNVMPVDMDITEHHTLIEEKKNDTFGPSQLM 278


>Z82284-6|CAE17979.1|  342|Caenorhabditis elegans Hypothetical
           protein T27E7.9 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -1

Query: 147 IVYNVSHQFFFSFIIQTPQTIIINLIYYLSYFVIIIMIIYEKFVV 13
           + +   H + F F++  P  I +     L+Y   I   +Y+  VV
Sbjct: 89  LYFRFPHFYIFEFLLLIPLAIFVTTWSILAYISTIFAQVYQVLVV 133


>U61951-1|AAB03157.2|  530|Caenorhabditis elegans Hypothetical
           protein C48A7.2 protein.
          Length = 530

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 156 SRSIVYNVSHQFFFSFIIQTPQTIIINLIYYLS 58
           SR IV+   ++ FFS+II    + I+++  YLS
Sbjct: 143 SRVIVWEKIYRIFFSWIISPLLSGIVSVFIYLS 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,120,328
Number of Sequences: 27780
Number of extensions: 119828
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)