Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G02
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    29   3.6  
08_01_0426 - 3757110-3758405                                           27   8.2  
07_03_0155 - 14520957-14521013,14521360-14521400,14521534-145218...    27   8.2  

>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +1

Query: 211 DYGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDL 315
           D+ ++Q+ D+    +G+ P K C+VTC N+ +T+D+
Sbjct: 137 DFDIYQVLDQ----SGNVPAKLCNVTCPNRGITEDI 168


>08_01_0426 - 3757110-3758405
          Length = 431

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 226 QINDKYWCSTGSTPGKDCHVTCNQLLTDDLRGL 324
           ++ D+ W    + PG+DC   C   + DD  GL
Sbjct: 209 RLGDERWTPV-AYPGQDCSTGCRHAIYDDADGL 240


>07_03_0155 -
           14520957-14521013,14521360-14521400,14521534-14521834,
           14522038-14522113,14522235-14522347
          Length = 195

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 413 FTVVISQSMLTVIFPSVPSVKL 348
           +TV++S  M+TV  P VP++++
Sbjct: 53  YTVILSAQMITVAIPVVPTIRV 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,574,365
Number of Sequences: 37544
Number of extensions: 337124
Number of successful extensions: 809
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)