Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_G02
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z77656-1|CAB01141.2|  350|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF000266-2|AAC71171.2|  268|Caenorhabditis elegans Hypothetical ...    27   7.4  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 187  KVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC 291
            KV  NG  D G  +I ++Y C  G    +D  V C
Sbjct: 902  KVLPNGRPDVGSLKIKEEYLCQAGQVVVRDLCVPC 936


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 161 RLTAPRLINYRSCFKSCIIRIGDVSHHASEPKGA 60
           R T PR   YRS  ++   R G  SHH S  + A
Sbjct: 356 RATVPRSAQYRSEHQTEHARTGSSSHHESRSRAA 389


>Z77656-1|CAB01141.2|  350|Caenorhabditis elegans Hypothetical
           protein F07B10.2 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -1

Query: 416 LFTVVISQSMLTVIFPSVPSVKLWRCNFLRSRPRKSSVSN*LQVTWQSFPGVDPVLHQYL 237
           LF  +++Q+ L ++   +P   ++ C +   +    +V+N   V  Q +PG+DP +  +L
Sbjct: 248 LFRALVAQTCLPMLMMYMPIGFMFSCPYFDLQ--LGAVTNYQTVMAQLYPGIDPFMLLFL 305


>AF000266-2|AAC71171.2|  268|Caenorhabditis elegans Hypothetical
           protein W08F4.6 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 214 YGLFQINDKYWCSTGSTPGKDCHVTCNQLLTDDLRGLLRKKLQR 345
           +G  Q N+ YW +   T GKD  + C +L  D  +  L+ K Q+
Sbjct: 198 FGPLQSNE-YWLTFSFTDGKDKKLGCARLWVDVCKYHLQDKSQK 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,486
Number of Sequences: 27780
Number of extensions: 288301
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)