Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F24
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   1.6  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   5.0  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    25   6.5  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   6.5  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   6.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.7  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -1

Query: 256 LAQAKVEYK*TNKIELRIAVKRD*Y*KASHIPASEEQVS*ELGKGVMDDANVIFGVK 86
           L  A++E+K   + +L  A +R     A  IPASE +   E G+G ++D + I  +K
Sbjct: 188 LNSAELEWKRVQQDQLTSASERSIENIADDIPASEPKAILENGEGCLNDNDNISKLK 244


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 87  LTPKITLASSMTPLPSSQLTCSSEAGIWEAF 179
           LTP I L S M P P + +  ++ A +WE F
Sbjct: 139 LTPSIFL-SVMKPCPKTSVLVTTVAALWEQF 168


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 22  CLLFFLPTINRIFPYIQR 75
           CLLF    +NR+ PY++R
Sbjct: 269 CLLFVGKCVNRVTPYLER 286


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 141 AENSARGSWTTPMLSLGSKNLSTLDIREDAIYCREK 34
           ++N   G  +   LS G+K+ ST    +D+IY R++
Sbjct: 378 SQNEESGMDSDTYLSFGTKSSSTYKADDDSIYHRKE 413


>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 475 GYLCRQYHLARKKSVAVSHISVGVGI 398
           GYL R  H   K S+ + ++ +GVG+
Sbjct: 98  GYLLRIRHRGPKSSILLRNVVMGVGV 123


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 84  FLTPKITLASSMTPLPSS 137
           F+ P +  ASS TP+PSS
Sbjct: 45  FIKPPLETASSSTPIPSS 62


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 174 LPISQPRRNR*AENSARGSWTTPMLSLGSKNLSTLD 67
           +P+S P  N+  +  A     TP  S+ SKNLST +
Sbjct: 478 IPLSLPFANKEPQPIAGFKKNTPETSVVSKNLSTFN 513


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 56   SSRISNVLRFFDP 94
            SSRISN +RF DP
Sbjct: 1048 SSRISNFIRFLDP 1060


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,831
Number of Sequences: 5004
Number of extensions: 54470
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)