Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F24
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0085 - 689489-689935                                             31   0.71 
04_04_1492 - 33974804-33975040,33975121-33975214,33975351-339757...    31   0.94 
11_01_0084 - 640563-641000                                             28   6.7  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    27   8.8  

>12_01_0085 - 689489-689935
          Length = 148

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 156 EAGIWEAF*YQSLFT-AMRSSILFVHLYSTLACASSRYLHGGLLP 287
           E  IW+AF + SLFT A+  SIL+      L C   R  H G  P
Sbjct: 6   ELPIWQAFGF-SLFTGALAGSILYAVCVLLLCCVDRRRRHAGAPP 49


>04_04_1492 -
           33974804-33975040,33975121-33975214,33975351-33975754,
           33975855-33976747,33977014-33977167
          Length = 593

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 503 LTAHGLMNWRLSLPAVSLSAQEECRS*SHLRWSRNSEPLH 384
           L + GL  + +S  A  + A    RS   LRW RN+ PLH
Sbjct: 181 LGSDGLWRFAISAVADGVGATLVYRSADFLRWERNAAPLH 220


>11_01_0084 - 640563-641000
          Length = 145

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 156 EAGIWEAF*YQSLFTAMRSSILFVHLYSTLACASSRYLHGGLLP 287
           E  IW+AF +  L  A+  S L+      L C   +  H G  P
Sbjct: 6   ELPIWQAFGFSLLTGALAGSTLYAVCVVLLCCVDRQRRHAGAPP 49


>01_07_0306 +
           42638683-42638990,42639074-42639314,42639935-42640236,
           42640431-42640607,42640853-42641617,42641697-42641791,
           42641889-42641951,42642047-42642135,42642229-42642324,
           42642457-42643104,42643596-42643628,42643838-42643912,
           42644442-42644603,42644604-42644674,42644758-42644815,
           42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 341 ISLGQGPEISFSSSCVMAQNSDSNGDVT 424
           +S+GQ   +  S+SCV  + S++NG  T
Sbjct: 710 LSMGQNSSLPQSNSCVSLEQSEANGPRT 737


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,345,407
Number of Sequences: 37544
Number of extensions: 383502
Number of successful extensions: 973
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)