Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F24
         (610 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126315-1|AAI26316.1| 1224|Homo sapiens MUC17 protein protein.        29   9.7  
AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr...    29   9.7  
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr...    29   9.7  
AF430017-1|AAL89737.1| 1029|Homo sapiens intestinal membrane muc...    29   9.7  
AF016692-1|AAB71685.1|  648|Homo sapiens small intestinal mucin ...    29   9.7  

>BC126315-1|AAI26316.1| 1224|Homo sapiens MUC17 protein protein.
          Length = 1224

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 12  GSRLFIIFSPYNKSHLPVYPTCLGFL-TPKITLASSMTPLPSSQLTCSS 155
           G+ +FI  +P   S   V+P   G + TP IT     TP  SS  T +S
Sbjct: 667 GTTIFIPSTPVTSSTADVFPATTGAVSTPVITSTELNTPSTSSSSTTTS 715


>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
            protein.
          Length = 4262

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 12   GSRLFIIFSPYNKSHLPVYPTCLGFL-TPKITLASSMTPLPSSQLTCSS 155
            G+ +FI  +P   S   V+P   G + TP IT     TP  SS  T +S
Sbjct: 3936 GTTIFIPSTPVTSSTADVFPATTGAVSTPVITSTELNTPSTSSSSTTTS 3984


>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
            protein.
          Length = 4493

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 12   GSRLFIIFSPYNKSHLPVYPTCLGFL-TPKITLASSMTPLPSSQLTCSS 155
            G+ +FI  +P   S   V+P   G + TP IT     TP  SS  T +S
Sbjct: 3936 GTTIFIPSTPVTSSTADVFPATTGAVSTPVITSTELNTPSTSSSSTTTS 3984


>AF430017-1|AAL89737.1| 1029|Homo sapiens intestinal membrane mucin
           MUC17 protein.
          Length = 1029

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 12  GSRLFIIFSPYNKSHLPVYPTCLGFL-TPKITLASSMTPLPSSQLTCSS 155
           G+ +FI  +P   S   V+P   G + TP IT     TP  SS  T +S
Sbjct: 472 GTTIFIPSTPVTSSTADVFPATTGAVSTPVITSTELNTPSTSSSSTTTS 520


>AF016692-1|AAB71685.1|  648|Homo sapiens small intestinal mucin
           MUC3 protein.
          Length = 648

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 12  GSRLFIIFSPYNKSHLPVYPTCLGFL-TPKITLASSMTPLPSSQLTCSS 155
           G+ +FI  +P   S   V+P   G + TP IT     TP  SS  T +S
Sbjct: 472 GTTIFIPSTPVTSSTADVFPATTGAVSTPVITSTELNTPSTSSSSTTTS 520


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,664,148
Number of Sequences: 237096
Number of extensions: 2098636
Number of successful extensions: 7774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7770
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)