Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F22
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    89   4e-19
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    31   0.071
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    28   0.66 
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    27   1.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   6.1  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   8.1  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 88.6 bits (210), Expect = 4e-19
 Identities = 47/111 (42%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
 Frame = +1

Query: 1   GKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQ 180
           GKL  +VDI+D  RALID P S   RQ IR   + LT   +K P  A + +V K W    
Sbjct: 23  GKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQD 82

Query: 181 LNEKWAKSQWAQKLANKEKRAQMTDYDRFK-LTSARVKRNRARTAVFKSLK 330
           +  KWA S WA+KL  K+ R+Q+ D+DRF  +   + +R +   AV K+LK
Sbjct: 83  VCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 31.5 bits (68), Expect = 0.071
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 102  ELVEANLLPRNTTAGTVNKCACLINDINYANQL 4
            E+ E+ LLP + T GTV   AC I D + A +L
Sbjct: 951  EMKESGLLPTSVTYGTVINAACRIGDESLAEKL 983


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 368 KSPKAQLKSYARRNP-TAKNQQRSNSFVPESSVK 466
           K+ KAQL+S A++NP  A   Q S SF P   ++
Sbjct: 446 KARKAQLQSMAQKNPLAASGLQSSLSFTPIQGIE 479


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 274 TSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSA 384
           T     +NR  T+ F     + A AG+FG+S  P  +
Sbjct: 160 TGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGS 196


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +1

Query: 160 KAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKA 339
           +A  + +  E+  +++  +KLA +EKR +  +    K    R+++ RA+ A  K +  ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRES 765

Query: 340 ARA 348
           A A
Sbjct: 766 AHA 768


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 267 QADVGPC*EESCKNSSV*KLEGESGARWCLRQK*NPQKRS*KATHEETQQQKTSKEVILL 446
           Q+D  P   E+C    + K   +S A W + Q  NP      AT +     K  K V +L
Sbjct: 257 QSDFVPSVSENCTPLELLKTVFQSPAPWDVHQLYNPDSLDVFATTDTLGLIKVGKNVPIL 316


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 81  TNSPQPTPFNKIPPK 125
           T +P+P+P+  +PPK
Sbjct: 619 TTAPKPSPWKSLPPK 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,597
Number of Sequences: 5004
Number of extensions: 31451
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)