Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F22
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    82   3e-16
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    77   1e-14
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528...    28   3.5  
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445...    28   4.6  
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    28   4.6  
08_01_0680 - 5958066-5960253,5960707-5961503                           27   8.1  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 42/114 (36%), Positives = 63/114 (55%)
 Frame = +1

Query: 1   GKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQ 180
           G+LV +VD++DQ RAL+D P   + R QI   +L LT  ++          + KA  +A 
Sbjct: 22  GRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEAD 79

Query: 181 LNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAA 342
           +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       LK  AA
Sbjct: 80  VKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 36/97 (37%), Positives = 57/97 (58%)
 Frame = +1

Query: 1   GKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQ 180
           G+LV +VD++DQ RAL+D P   + R QI   +L LT  ++          + KA  +A 
Sbjct: 35  GRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEAD 92

Query: 181 LNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVK 291
           +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 93  VKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>03_02_0927 -
           12452262-12452428,12452538-12452607,12452689-12452830,
           12452937-12453117,12454068-12454203
          Length = 231

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 347 ARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLAHF 189
           A A+F  K+ N  ++A  +    D  L     ++  L S+  NFC+   LA+F
Sbjct: 124 AAASFRVKVNNMLMIAHDITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYF 176


>12_01_0551 +
           4446937-4447353,4449141-4450013,4451206-4451244,
           4452339-4452581
          Length = 523

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 170 VHAFLTTRVGAVKGYFRRNFVKWSWLRR 87
           +H   T+R+G  + +FR   V + WLRR
Sbjct: 351 LHCTSTSRLGIFEAWFRPLLVDFGWLRR 378


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 371 ILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICAL 237
           IL L  TP   A  FK+L    + R  L     ++NL  S++C +
Sbjct: 338 ILTLTDTP-NVAVAFKILMNVNMERITLAMEIATINLEVSIVCVM 381


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 374  GILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLA 195
            G L+   +  R +FT   ++   L   +L        L  SV+  LF L+A    +W L 
Sbjct: 930  GSLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCISVLSLLFWLYAYLAEYWKLF 989

Query: 194  HF 189
            HF
Sbjct: 990  HF 991


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,718,337
Number of Sequences: 37544
Number of extensions: 206653
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)