Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F21
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.17
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 0.67
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 28 0.67
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 27 1.2
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 25 3.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 3.6
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 25 3.6
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 4.7
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.2
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 24 8.2
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 24 8.2
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 24 8.2
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 24 8.2
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.17
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 223 STTGAMARSYSMCLSPAVSCCPVGRCRWTGNPPRPILAFSPPTKTWTQCATLN 381
++T + S S LS + SC TGN P+ PPT + T T N
Sbjct: 374 ASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTN 426
Score = 24.6 bits (51), Expect = 6.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 223 STTGAMARSYSMCLSPAVSCCPVGRCRWTGNPPRPILAFSPPTKT 357
++T + S S S + SC TGN P+ PPT T
Sbjct: 320 ASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 364
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 0.67
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 81 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLD 227
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 0.67
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 403 RISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPAISTSN 251
+ S + L V S+L + +VL L P P G R PA++TSN
Sbjct: 69 KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 392 HEYLFKVAHCVHVFVGGENAS 330
H LF V+H V FV GENA+
Sbjct: 65 HSGLFDVSHMVQWFVRGENAT 85
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 409 YRRISFTNTCSKLRIVSMSSLAEKMQVLVLGD 314
Y+R N C +L + S+S L +K Q +L D
Sbjct: 119 YQRTRVENVCKRLGLKSLSFLWQKDQEKLLND 150
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 3.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 118 SMTLTGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARSYSM 258
S+ T SAT S S+ A ++ ++S + NSTT A A S S+
Sbjct: 199 SLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 3.6
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 108 HLFFWSLSVDPIILVFLPSDSYNILLLTGY 19
++ WSL + P+I F+PS + + G+
Sbjct: 181 YVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 48 SQKVEKPVLSGQRIKTRKRDE 110
+Q++++PV G IK K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 24.2 bits (50), Expect = 8.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 84 RIKTRKRDEKEKYDPNG-FRDA---LVQGLERAGGDLDAAYKFLDSAGSK 221
R + ++ +E D NG F DA +QG E G L+ + FL+ A +K
Sbjct: 209 RTMEQLKEIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSFLEDAKTK 258
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.2 bits (50), Expect = 8.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 87 IKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVIFD--V 260
+ ++K+D + Y G D LV A LDA +D + + Y E I D +
Sbjct: 376 LHSKKQDILKLYSDLGINDDLVVPFCEAASSLDA----IDDLNDYIHF-TYSEQIRDRAL 430
Query: 261 LIAGGLLLPGGS 296
L+ GL P GS
Sbjct: 431 LMGTGLRRPQGS 442
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +1
Query: 130 TGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARSYSM 258
TG A+P R+W A ++ + + + R T M++ M
Sbjct: 637 TGDASPKDRIWGTSACVTASVLQG-VSIVRVHDTKEMSKVVGM 678
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 297 VSMDGESPKTNTCIFSANEDMDTMRNFEQV 386
+ DG + TCIFS ++D ++ +V
Sbjct: 478 IEFDGLLDEERTCIFSGKPNIDILKQIIEV 507
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 8.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Frame = +2
Query: 257 CAYRRRSPAARWVGVD-----GRGIPQDQY-LHFLRQRRHG 361
CA + RS A RW G+ G+G+ +D + +RR G
Sbjct: 310 CALQLRSEAPRWKGIPIIISAGKGLDRDYFEARITFKRREG 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,457
Number of Sequences: 5004
Number of extensions: 33029
Number of successful extensions: 113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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