Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F21
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 70 9e-13
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 30 0.65
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 0.65
07_03_0634 + 20125242-20125688 29 1.5
01_07_0280 + 42452993-42453337,42453778-42453981 27 4.6
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 27 6.0
03_05_0600 + 26021863-26022469,26022562-26022992 27 6.0
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 6.0
12_01_0247 - 1836971-1837810 27 8.0
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 27 8.0
06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477... 27 8.0
06_01_0627 - 4567304-4567521,4567649-4567727,4567827-4568165,456... 27 8.0
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 27 8.0
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623 27 8.0
01_03_0020 - 11698429-11699126,11699557-11700532 27 8.0
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 69.7 bits (163), Expect = 9e-13
Identities = 39/92 (42%), Positives = 53/92 (57%)
Frame = +3
Query: 15 LHNLSIAIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAY 194
L +L +++ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+
Sbjct: 57 LSDLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVA 113
Query: 195 KFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPG 290
K ++S S L++ RYG+ F+V+ GG PG
Sbjct: 114 KSIES--SDLNFSRYGDTFFEVVFIGGRTQPG 143
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 30.3 bits (65), Expect = 0.65
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 108 EKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE-VIFD 257
EK+K DP GF D V A G ++ F S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 30.3 bits (65), Expect = 0.65
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 81 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE 245
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>07_03_0634 + 20125242-20125688
Length = 148
Score = 29.1 bits (62), Expect = 1.5
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 94 PEKEMRKRSMTLTGSATPLSR---VWSARAVISTRLTNS*IRLARNSTTGAMARSYSMCL 264
P + + R+M S LS V S RAV S T S + T + +S+ L
Sbjct: 24 PRRRVHWRNMRCANSVAYLSLSAFVMSGRAVASAAATAS-PPVGVQLTVTSEHSEWSI-L 81
Query: 265 SPAVSCCPVGRCRWTG 312
SP +C P G+ +W G
Sbjct: 82 SPRKTCHPTGKVKWKG 97
>01_07_0280 + 42452993-42453337,42453778-42453981
Length = 182
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 335 ASIGLGGFPVHRHRPTGQQETAGDKHIEYDLAIAP 231
A++G GG+ H HR +Q + G K +Y A P
Sbjct: 141 AAVGAGGYAYHEHREQ-KQASYGAKEQQYGYARMP 174
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 197 IPRFGWLETRLPALWRGHIRCAYRRRSPAAR 289
I RFG + P+ +RG+ + R RSPAAR
Sbjct: 45 ISRFGAWYSGSPSPYRGNPKSRSRSRSPAAR 75
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 310 PSIDTDPPGSRRPPA 266
PS+D +PPG PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 271 AVSCCPVGRCRWTGNPPRPILAFSPPTKT 357
A C P GR G PP P+ PP ++
Sbjct: 24 ASKCWPFGRGGGDGEPPPPLPPMEPPKRS 52
>12_01_0247 - 1836971-1837810
Length = 279
Score = 26.6 bits (56), Expect = 8.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 354 LRWRRKCKYWSWGIPRPS 301
L W YW+W + RPS
Sbjct: 138 LYWEHVLSYWNWHVERPS 155
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 292 GRCRWTGNPPRPILAFSPPTK 354
GR W N P P L FSPP++
Sbjct: 36 GRLDWA-NQPNPFLRFSPPSQ 55
>06_03_1380 +
29747187-29747267,29747349-29747481,29747758-29747770,
29748027-29748118,29749011-29749831,29750375-29750677
Length = 480
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 105 DEKEKYDPNGFRDALVQGLERAGGDLDAAYKF 200
D K +Y+ + R ALV ++R GG A F
Sbjct: 273 DGKPEYNQDAHRQALVDWVDRVGGTASAGMVF 304
>06_01_0627 -
4567304-4567521,4567649-4567727,4567827-4568165,
4568202-4568239,4568462-4568837
Length = 349
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 92 LYPLTR*YWFFYLLTHTIYCY*QVM*EPLT 3
L PLT+ WF ++ I+C Q++ PL+
Sbjct: 105 LKPLTKELWFATMILFPIHCLGQIIKSPLS 134
>02_05_1170 +
34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -2
Query: 409 YRRISFTNTCSKLRIVSMSSLAEKMQVLVLGD 314
Y+R+ + CS+L +VS++ L ++ Q L+L +
Sbjct: 557 YQRLRVESVCSRLGLVSLAYLWKQDQTLLLDE 588
>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
Length = 400
Score = 26.6 bits (56), Expect = 8.0
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1
Query: 211 LARNSTTGAMARSYSMCLSPAVSCCPVGRCRWTGNPPRPILAFSPP 348
LAR S GA+A YS C S + C G C +PP ++ PP
Sbjct: 341 LARCSICGAVALRYSFCCS-RILC---GTCGCPCDPP-AVVVLPPP 381
>01_03_0020 - 11698429-11699126,11699557-11700532
Length = 557
Score = 26.6 bits (56), Expect = 8.0
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 123 DPNGFRDALVQGLER-AGGDLDAAYKFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSV 299
DPN +QG A DL A F + ++ Y + + GGL+ P G +
Sbjct: 428 DPNQNTGTTIQGCAIVAAPDLAANTAFATTNYLGRPWKLYSRTVIMQSVVGGLIDPAGWM 487
Query: 300 SMDGE 314
DG+
Sbjct: 488 PWDGD 492
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,931
Number of Sequences: 37544
Number of extensions: 264914
Number of successful extensions: 995
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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