Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F20
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      38   0.001
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.62 
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    27   1.9  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.5  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   3.3  
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.4  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   5.8  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = +1

Query: 427 EFAESAEEGPTTRFLRELAVKYAMVIVSSILERDEKHADILWNT 558
           + AE A EGP+ + +  LA KY + I+    E++EK ++I++N+
Sbjct: 59  QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNS 102


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +1

Query: 496  MVIVSSILERDEKHADIL 549
            +++VS++LE DEKH D++
Sbjct: 998  LIVVSNLLEMDEKHVDVV 1015


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 379 WNMPFAFCTREKQPWCEFA-ESAEEGPTTRFLRELAVKYAMVIVSSILERDEK 534
           +N  F    +EK+   E   E A  G  T+F+R   V+YA  I   IL+  +K
Sbjct: 396 YNEQFKDLMKEKRDGYEILFEDAIRGDPTKFIRYDEVEYAWKIWDEILDSPKK 448


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 266 IPTDRPIN-EQKKAIFDKVKKIIDVAGQEGVNIICFKNYGTCPSLSARGRNNPGANSLNL 442
           +P++R +    +  +FD ++ +I+ +G   + +  F          A  RN+P   S + 
Sbjct: 79  VPSERAVELAHEYNVFDLIQPLIEYSGSAFMPMSTFTPQSNRKPTEAYRRNSPVKKSFSR 138

Query: 443 PRKDRLHAFSVS 478
           P    L+ ++ S
Sbjct: 139 PSHSLLYPYTSS 150


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 50  IVNNNLSGKDLEEFNRIYYGR 112
           ++ N L  K+LE+ NRI YG+
Sbjct: 747 VLQNTLVAKNLEQANRIAYGK 767


>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 71  GKDLEEFNRIYYG-RKDHFEIKLKDTS 148
           GKD  E  RIY   RK+ F+I LK  S
Sbjct: 116 GKDFTEMTRIYLSIRKNFFQICLKTHS 142


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 386 CPSLSARGRNNPGANSLNLPRKDRLHAFSVSWLSNTPW*SCLLSSRGTRNTPTF 547
           C +L A G     A     PR  R  +F V+W S T W + + S   T++T  F
Sbjct: 134 CSALPAAGSIYLWAAESAGPRFGRFVSFLVAWWSTTAWTTFVASI--TQSTANF 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,104
Number of Sequences: 5004
Number of extensions: 50838
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)