Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F19
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 53 4e-08
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 29 0.52
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.69
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 27 1.6
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 27 2.1
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 26 4.8
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 26 4.8
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 6.4
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 6.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 8.5
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/62 (37%), Positives = 41/62 (66%)
Frame = +2
Query: 416 EFAESAEEGPTTRFLRELAVKYAMVIVSSILERDEKHADILWNTTVIISDTGNVIGKHRK 595
+ AE A EGP+ + + LA KY + I+ E++EK ++I++N+ + I++ GN+ G +RK
Sbjct: 59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRK 118
Query: 596 NH 601
H
Sbjct: 119 VH 120
>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 29.1 bits (62), Expect = 0.52
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 59 GKDLEEFNRIYYG-RKDHFEIN*KIH--QLPLQR 151
GKD E RIY RK+ F+I K H QLPL R
Sbjct: 116 GKDFTEMTRIYLSIRKNFFQICLKTHSPQLPLGR 149
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 28.7 bits (61), Expect = 0.69
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 485 MVIVSSILERDEKHADIL 538
+++VS++LE DEKH D++
Sbjct: 998 LIVVSNLLEMDEKHVDVV 1015
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 416 EFAESAEEG-PTTRFLRELAVKYAMVIVS-SILERDEKHADILWNTTVIISDTGNVIGKH 589
++AE EE P+ + L +A + SI ER + L+NT ++ +G +I H
Sbjct: 96 QYAEPIEESSPSYQALSSMAKDTKTYLFGGSIPERKDGK---LYNTAMVFDPSGKLIAVH 152
Query: 590 RKNH 601
RK H
Sbjct: 153 RKIH 156
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 368 WNMPFAFCTREKQPWCEFA-ESAEEGPTTRFLRELAVKYAMVIVSSILERDEK 523
+N F +EK+ E E A G T+F+R V+YA I IL+ +K
Sbjct: 396 YNEQFKDLMKEKRDGYEILFEDAIRGDPTKFIRYDEVEYAWKIWDEILDSPKK 448
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 567 VSLIITVVFQRMSACFSSLSRIEDTITMAYLTASSR 460
V I++ FQR+ SSL R ED++ Y +R
Sbjct: 67 VKPILSKAFQRLEDSISSLQRQEDSLKTKYELQEAR 102
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 187 LKREQTRPPRIVKLVLFNTRSRYQPTVQLTSRKK 288
+K++QT+ + VKLVL N S P V +++K
Sbjct: 1 MKKKQTKVKQTVKLVLRNPLSISWPIVDANTQEK 34
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 133 SIAAAKKLILRLPRTLSRLKREQTRPPRIVKLVLFNTRSRYQPTVQLTSR 282
S+AAA+ +L P + +R R + PP + L N S P+ + R
Sbjct: 212 SLAAARNPLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTSPVSPSSMASRR 261
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 375 CPSLSARGRNNPGANSLNLPRKDRLHAFSVSWLSNTPW*SCLLSSRGTRNTPTF 536
C +L A G A PR R +F V+W S T W + + S T++T F
Sbjct: 134 CSALPAAGSIYLWAAESAGPRFGRFVSFLVAWWSTTAWTTFVASI--TQSTANF 185
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +1
Query: 124 KDTSIAAAKKLILRLPRTLSRLKREQTRPPRIVKLVLFNTRSRYQPTVQLTSRKKQ 291
K S+ AAK + +S ++ Q RPP NT P T+ KQ
Sbjct: 998 KPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQ 1053
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,909
Number of Sequences: 5004
Number of extensions: 56641
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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