Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F19
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 115 3e-26
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 38 0.008
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 37 0.014
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 34 0.076
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 32 0.40
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 31 0.93
11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426 29 2.2
10_02_0187 - 6447189-6448532 29 2.2
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 28 5.0
07_03_0280 + 16219427-16220236,16220660-16220908 28 5.0
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419 28 6.6
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 27 8.7
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 27 8.7
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058... 27 8.7
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 115 bits (276), Expect = 3e-26
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = +2
Query: 362 ELWNMPFAFCTREKQPWCEFAESAEEGPTTRFLRELAVKYAMVIVSSILERDEKHADILW 541
E W MPFAFCTREK+ WCEFAE + G +T+FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPVD-GESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 542 NTTVIISDTGNVIGKHRKNH 601
NT V+I + GN+IG HRKNH
Sbjct: 206 NTAVVIGNHGNIIGIHRKNH 225
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +3
Query: 117 SIKRYINCRCKEADFEIAAYAFPA-KKGANPPSEDR*VGIIQHSIAIPTDRPINEQKKAI 293
S+ + K +F++ A+ F A K+ P R VG+IQ+SIAIPT +QKKAI
Sbjct: 62 SLPEATSALAKAHNFDVQAFRFDADKEYLRQPRVIR-VGLIQNSIAIPTTSHFADQKKAI 120
Query: 294 FDKVKKIIDVAGQEGVNII 350
+KVK +ID AG GVNI+
Sbjct: 121 MEKVKPMIDAAGDAGVNIL 139
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +2
Query: 362 ELWNMPFAFCTREKQPWCEFAESAEEG----PTTRFLRELAVKYAMVIVSSILERDEKHA 529
E+WN P++ + E+AE E G P+ + E+A + +V + E+
Sbjct: 85 EIWNGPYS-----NDSFPEYAEDIEAGGDAAPSFSMMSEVARSLQITLVGGSIS--ERSG 137
Query: 530 DILWNTTVIISDTGNVIGKHRKNH 601
+ L+NT + G + GKHRK H
Sbjct: 138 NKLYNTCCVFGSDGELKGKHRKIH 161
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 362 ELWNMPFAFCTREKQPWCEFAESAEEG--PTTRFLRELAVKYAMVIVSSILERDEKHADI 535
E+WN P++ E P E + G P+ L E+A + + IV + E+ +
Sbjct: 20 EIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ERSSGR 72
Query: 536 LWNTTVIISDTGNVIGKHRKNH 601
L+NT +I G + KHRK H
Sbjct: 73 LFNTCCVIGPDGQIKAKHRKLH 94
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 34.3 bits (75), Expect = 0.076
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 440 GPTTRFLRELAVKYAMVIVSSILERDEKHADILWNTTVIISDTGNVIGKHRK 595
GP L LA KY + +V ++ER L+NT + G +GKHRK
Sbjct: 110 GPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK 158
>10_08_0747 - 20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/90 (22%), Positives = 36/90 (40%)
Frame = +2
Query: 317 RCRRSRGS*YNLVSXELWNMPFAFCTREKQPWCEFAESAEEGPTTRFLRELAVKYAMVIV 496
RC G + +WN+ + +E QP E A ++ R++ V + +
Sbjct: 749 RCLADYGEQRPSMGDVVWNLEYCLQLQESQPSTETALDLDDS-GAHLPRDIVVARRVAPL 807
Query: 497 SSILERDEKHADILWNTTVIISDTGNVIGK 586
+ D D+ W+ T + TGNV +
Sbjct: 808 APDASADAAGDDMSWSETASFTATGNVFSQ 837
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 440 GPTTRFLRELAVKYAMVIVSSILERDEKHADILWNTTVIISDTGNVIGKHRK 595
GP L +A KY + +V ++ER+ L+ + + G +GKHRK
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRK 162
>11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426
Length = 860
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 189 KKGANPPSEDR*VGI-IQHSIAIPTDRPINEQKKAIFD 299
+ +P SE R VG + + +P D N++KKA FD
Sbjct: 221 RTNTDPDSESRNVGFPLTNHFYVPRDEVFNDRKKAYFD 258
>10_02_0187 - 6447189-6448532
Length = 447
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 315 IDVAGQEGVNIIWFPXNYGTCPSLSARGRNNPGANSLNLPRK--DRLH 452
+ V +N+ WF N G RG +NPG +++L K ++LH
Sbjct: 374 LKVKSAADINLRWFCENSGILLFTLGRGSSNPGTFAMSLATKEVEKLH 421
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 420 SLNLPRKDRLHAFSVSWL 473
SLN P++DRLHA W+
Sbjct: 182 SLNKPQRDRLHALGFDWV 199
>07_03_0280 + 16219427-16220236,16220660-16220908
Length = 352
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 261 DRPINEQKKAIFDKVKKIIDVAGQEG 338
D IN + +FDK+ ++DVAG G
Sbjct: 190 DMAINGSGRQVFDKITSMVDVAGGTG 215
>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
Length = 528
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 96 DGKTISKSIKRYINCRCKEADFEIAAYAFPAKKGANPPSEDR 221
+G+T R +N C DF AA A A++G + P +R
Sbjct: 91 EGETREDVFLRKLNVCCVVFDFSSAAAAAAAERGRDSPERER 132
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -3
Query: 542 SKECRRVSRPSRG*KTRLP--WRI*QPAHGESV*SVLPRQIQR-IRTRVVSPACRKRRAC 372
++ C+ VSRPSR +P R P+ SV S + R Q RTR +P+ R + A
Sbjct: 293 TERCKSVSRPSRAVTLPVPVLHRSSSPSKASSVTSSISRSFQSPSRTRPSTPS-RSQSAG 351
Query: 371 SI 366
SI
Sbjct: 352 SI 353
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = -1
Query: 583 SNYVSRVTNNNRRIPKNVGVFLVPLE------DRRHDYHGVFDSQLTEKACSR 443
+ Y V NN P+N VFLV + DR+ +H FD +T A R
Sbjct: 544 TEYGGEVGENNHMNPRNSRVFLVTMSPTHTRVDRKMMFHSNFDFTITALATWR 596
>06_02_0107 -
11904636-11904699,11904940-11905013,11905671-11905802,
11910309-11911018,11911110-11911852,11911936-11913753,
11914037-11914338
Length = 1280
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/63 (19%), Positives = 28/63 (44%)
Frame = -2
Query: 591 RCFPITFPVSLIITVVFQRMSACFSSLSRIEDTITMAYLTASSRRKRVVGPSSADSANSH 412
+C P F + + ++ + L R+ DT+ ++ + ++ K++ S D H
Sbjct: 570 KCHPHEFCMKMFARALYANPNRSNKELGRLRDTLQISENSLDTKAKKIFKFSYRDLHREH 629
Query: 411 QGC 403
+ C
Sbjct: 630 KTC 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,866,724
Number of Sequences: 37544
Number of extensions: 359095
Number of successful extensions: 977
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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